Table 1.

The list of differentially expressed genes (DEGs) between deep rooting and shallow rooting varieties under different criteria.

			Number of DEGs
FDR < 0.05			13,242
	Fold changes > 2		4,185
	H/L > 2		2,551
	H/L < 0.5		1,634
		Average FPKM > 0.5	1,789
		H or L > 0.5	1,403
		Both H and L >0.5	386