Table 2.
KEGG pathway enrichment analysis of 1,789 genes differentially expressed between deep rooting and shallow rooting rice varieties.
| KEGG pathway | ID | P-values | Classification |
|---|---|---|---|
| DNA replication | ko03030 | 0.000657 | Genetic information processing |
| Mismatch repair | ko03430 | 0.000669 | Genetic information processing |
| Nucleotide excision repair | ko03420 | 0.002917 | Genetic information processing |
| Homologous recombination | ko03440 | 0.0041 | Genetic information processing |
| Metabolism of xenobiotics by cytochrome P450 | ko00980 | 0.007219 | Metabolism |
| Drug metabolism—cytochrome P450 | ko00982 | 0.007219 | Metabolism |
| Plant-pathogen interaction | ko04626 | 0.021512 | Organismal systems |
| MAPK signaling pathway | ko04010 | 0.028472 | Environmental information processing |
| Phenylpropanoid biosynthesis | ko00940 | 0.045928 | Metabolism |
| Phenylalanine, tyrosine and tryptophan biosynthesis | ko00400 | 0.049828 | Metabolism |
The DEGs used here meet three criteria: FDR < 0.05, fold changes > 2 and average FPKM > 0.5 as this table shows.