Table 3.
The number of differentially expressed genes (shallow roots vs. deep roots) that could be repeatedly detected in more than three varieties.
| Gene ID | UpsH | DownsH | UpsL | DownsL | UpsM | DownsM |
|---|---|---|---|---|---|---|
| LOC_Os01g07850 | 4 | 0 | 4 | 0 | ||
| LOC_Os01g22670 | 3 | 0 | ||||
| LOC_Os01g57958 | 0 | 10 | 0 | 5 | ||
| LOC_Os01g57968 | 0 | 8 | 0 | 6 | ||
| LOC_Os01g71340 | 3 | 3 | 1 | 3 | ||
| LOC_Os02g37190 | 4 | 0 | 4 | 0 | 3 | 0 |
| LOC_Os02g37250 | 3 | 0 | ||||
| LOC_Os02g48710 | 4 | 0 | ||||
| LOC_Os03g05640 | 0 | 4 | ||||
| LOC_Os03g31750 | 0 | 6 | ||||
| LOC_Os04g16722 | 0 | 10 | 0 | 7 | ||
| LOC_Os04g56100 | 7 | 0 | ||||
| LOC_Os05g15880 | 0 | 5 | 1 | 3 | ||
| LOC_Os05g48200 | 0 | 7 | ||||
| LOC_Os05g48890 | 5 | 0 | ||||
| LOC_Os06g31960 | 4 | 0 | ||||
| LOC_Os07g25050 | 3 | 0 | ||||
| LOC_Os07g25060 | 3 | 0 | ||||
| LOC_Os09g00999 | 0 | 8 | ||||
| LOC_Os09g01000 | 0 | 7 | 0 | 7 | ||
| LOC_Os09g24370 | 4 | 0 | ||||
| LOC_Os10g21346 | 0 | 5 | ||||
| LOC_Os10g21372 | 0 | 7 | 0 | 7 | ||
| LOC_Os11g24140 | 3 | 5 | 0 | 6 | 1 | 3 |
| LOC_Osm1g00500 | 0 | 6 | ||||
| LOC_Osp1g00770 | 0 | 4 | ||||
| LOC_Osp1g01040 | 0 | 4 |
Ups were the up regulated genes that expressed higher in shallow roots than in deep roots; Downs were just the opposite. Superscript H is the group of deep rooting rice varieties, superscript L is the group of shallow rooting rice varieties and superscript M is the group of median rooting rice varieties.