Table 1. Mitochondrial DNA (mtDNA) genotypes at nine polymorphic sites in sea lion hosts and matched tumours.
Coordinates are relative to the sea lion mtDNA reference genome, NC_008416 21. Individual California sea lions (CSLs) are labelled numerically and matched hosts and tumours are represented side-by-side. Alleles, represented by nucleotide code (A,C,G,T), are shown. Alleles that differ from the reference are shaded in grey.
| Individual: | Reference | CSL 1 | CSL 2 | CSL 3 | CSL 4 | CSL 5 | CSL 6 | CSL 7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Tissue: | Host | Tumour | Host | Tumour | Host | Tumour | Host | Tumour | Host | Tumour | Host | Tumour | Host | Tumour | ||
| mtDNA coordinate | 15524 | T | T | T | T | T | T | T | T | T | T | T | C | C | T | T |
| 15527 | T | T | T | T | T | T | T | C | C | C | C | C | C | T | T | |
| 15528 | T | T | T | T | T | T | T | C | C | C | C | C | C | T | T | |
| 15550 | G | G | G | G | G | G | G | A | A | A | A | A | A | G | G | |
| 15551 | A | A | A | A | A | A | A | G | G | G | G | A | A | A | A | |
| 15629 | C | C | C | C | C | C | C | C | C | C | C | C | C | T | T | |
| 15652 | A | A | A | A | A | A | A | A | A | A | A | G | G | A | A | |
| 15660 | T | T | T | T | T | T | T | C | C | C | C | C | C | T | T | |
| 15812 | G | G | G | G | G | G | G | A | A | A | A | A | A | G | G | |