Table 2.

Table of RNA Sequences Tested by Family

Family	Name	Accession No.	Length	MFE Accession No.
tRNA	Sinorhizobium meliloti	AL591786	77	0
	Phalaenopsis aphrodite, formosana	AY916449	73	0.954
	Corynebacterium diphtheriae	BX248359	73	0.755
	Burkholderia cepacia	L28151	76	0.205
	Saccharomyces cerevisiae	J01381	75	0.51
5S rRNA	Miniopteris fossilis	V00647	120	0.15
	Metasequoia glyptostroboides	M10432	120	0.29
	Schizosaccharomyces pombe	K00570	119	0.85
	Oryza sativa	M18170	119	0.55
	Pleurodeles waltl	X16851	122	0.76
RNaseP	Tarsius syrichta	L08801	286	0.13
	Zygosaccharomyces bailii	AF186231	205	0.68
	Acidithiobacillus ferrooxidans	X16580	327	0.59
	Pseudomonas fluorescens	M19024	354	0.49
	Heliobacterium chlorum	U64881	342	0.32
Intron group I	Spartina anglica	Z69912	554	0.06
	Halocaridina rubra	L19345	543	0.30
	Tetrahymena thermophila	V01416	506	0.74
	Pinus thunbergii	D17510	550	0.13
	Bensingtonia yamatoana	D38239	480	0.51
16S rRNA (small)	Sciurus aestuans	AJ012746	968	0.34
	Acomys cahirinus	X84387	940	0.20
	Lemur catta	AF038013	954	0.251
	Navia robinsonii	U93061	969	0.447
	Vombatus ursinus	U61078	958	0.135
16S rRNA (medium)	Tubulinosema acridophagus	AF024658	1399	0.371
	Vittaforma corneae	L39112	1259	0.33
	E. cuniculi	X98467	1295	0.17
	Varimorpha imperfecta	AJ131646	1231	0.288
	Endoreticulatus schubergi	L39109	1252	0.23
16S rRNA (long)	E. coli	J01695	1542	0.41
	Streptomyces griseus	X61478	1528	0.322
	Mycoplasma hyopneumoniae	Y00149	1537	0.639
	Mycobacterium leprae	X56657	1548	0.179
	Comamonas testosteroni	M11224	1536	0.524
16S rRNA (extra)	Oryctolagus cuniculus	X06778	1863	0.177
	Rhodogorgon carriebowenis	AF006089	1841	0.338
	Plasmodium falciparum	M19172	2090	0.423
	Zea mays	X00794	1962	0.258
	Plasmodium vivax	U07367	2063	0.385

Note the range of both sequence lengths and MFE accuracies.