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. 2017 Jun 29;113(2):313–320. doi: 10.1016/j.bpj.2017.06.008

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© 2017 Biophysical Society.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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Deviation in the kissing loop junction conformation is a result of SLI conformational entropy and not SLV. Left: RMSD histograms of +Mg²⁺ simulations, average and SD of first and second microseconds of simulation. Top: Junction residues. Middle: junction residues contributed by SLI. Bottom: SLV. Right: Representative conformations from cluster analysis for SLV (purple) and SLI (multicolored). SLI structures are representative of cluster populations of (a) 69.1, (b) 8.3, (c) 6.6, and (d) 4.2%. To see this figure in color, go online.