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. 2017 Jul 27;8:1422. doi: 10.3389/fmicb.2017.01422

Table 4.

Log-likelihood values and parameter estimates for rps3 genes in Hypocreales.

Model ℓ Estimates of parameters Positively selected sites
M1a (neutral) -10810.63 Inline graphic0 = 0.94987, Inline graphic1 = 0.05013 Not allowed
M2a (selection) -10810.63 Inline graphic0 = 0.94987, Inline graphic1 = 0.00563, Inline graphic2 = 0.04450
Inline graphic0 = 0.06045, Inline graphic1 = 1.00000, Inline graphic2 = 1.00000		 6V, 80D, 81E, 84T, 85L, 87N, 92A, 94S, 98E, 101A, 119E, 192Q, 204V, 219Q, 232S, 235E, 236A, 237K, 238S, 253G, 273V, 275K, 305S, 321S
M7 (beta) -10788.91 Inline graphic = 0.06958, Inline graphic = 0.60258 Not allowed
M8 (β and ω) -10702.06 Inline graphic0 = 0.98400, Inline graphic1 = 0.01600
p = 0.15774, Inline graphic = 2.18092, Inline graphics = 1.46813		 6V, 30S, 80D, 81E, 84T, 85L, 87N, 92A, 94S, 98E, 99L, 100L, 101A, 102N, 119E, 135E, 145N, 192Q, 204V, 205I, 207V, 209D, 219Q, 220V, 231L, 232S, 235E, 236A, 237K, 238S, 242I, 253G, 273V, 275K, 305S, 321S

p is the number of parameters in the ω distribution. Positive selection sites with P ≥ 95% were shown in bold.