Table 3.
Results of blast-extend-repraze searches using predicted proteins encoded by V. cholerae AM-19226 ORFs
| AM-19226 ORF | Homolog | Homology span (size) | Identities, % | Positives, % | Description | |
|---|---|---|---|---|---|---|
| VcsN2 (NT01VC2327) | VscN2 (Vp) | VPA1338 | 1–420 (420) | 96 | 98 | ATPase YscN |
| VcsC2 (NT01VC2328) | VscC2 (Vp) | VPA1339 | 1–487 (487) | 93 | 97 | TTSS protein EscC |
| VcsT2 (NT01VC2330) | Spa29 (Vp) | VPA1341 | 1–227 (227) | 90 | 97 | Mxi-Spa secretion protein Spa29 |
| VcsR2 (NT01VC2331) | Spa24 (Vp) | VPA1342 | 20–243 (243) | 86 | 90 | TTSS protein Spa24 |
| VcsQ2 (NT01VC2334) | Spa33 (Vp) | VPA1349 | 1–70 (71) | 94 | 94 | TTSS protein Spa33 |
| VcsU2 (NT01VC2339) | EscU (Vp) | VPA1354 | 13–337 (345) | 87 | 91 | TTSS protein EscU |
| VcsV2 (NT01VC2340) | VcrD2 (Vp) | VPA1355 | 1–627 (627) | 83 | 88 | TTSS protein EscV |
| VspD (NT01VC2345) | EspD (Vp) | VPA1362 | 1–349 (349) | 81 | 85 | Secreted protein EspD |
| VcsJ2 (NT01VC2348) | EprK (Vp) | VPA1367 | 1–177 (177) | 80 | 86 | TTSS lipoprotein precursor EprK |
| ToxR (NT01VC2333) | ToxR (Vp) | VPA1348 | 1–183 (183) | 83 | 90 | ToxR transcriptional activator |
| ToxR (Vp) | VP820 | 8–127 (292) | 33 | 54 | ||
| ToxR (Vp) | VPA1332 | 29–101 (253) | 39 | 58 | ||
| ToxR (V. cholerae) | 20–145 (294) | 34 | 57 | |||
| Tdh | TdhA (Vp) | VPA1314 | 8–188 (189) | 48 | 71 | TDH |
| TdhS (Vp) | VPA1378 | 8–187 (189) | 48 | 70 | ||
| NT01VC2350 | hypothetical (Vp) | VPA1370 | 1–469 (484) | 53 | 67 | WH2 motif domain protein |