Table 2.
Summary of advantages and disadvantages of the main NAE methods. GuSCN, guanidine thiocyanate; CsCl, cesium chloride; EtBr, ethidium bromide; CTAB, cetyltrimethylammonium bromide.
| Method | Advantage | Disadvantage | Reference |
|---|---|---|---|
| (1) GuSCN-phenol- chloroform extraction | High purity and yield of DNA or RNA | Hazardous chemicals | [21, 23] |
| (2) Alkaline extraction | Fastest, reliable, and relatively easy procedure | Medium purity and fragmentation of genomic DNA | [26] |
| (3) CsCl gradient centrifugation with EtBr | High purity and yield of DNA or RNA | Laborious, costly and time consuming, | [29, 30] |
| (4) Oligo(dT) cellulose chromatography | Fast protocol, good yield of mRNA recovery | Purification bias for mRNAs | [1] |
| (5) Chelex® extraction | Quick and simple protocol; no use of hazardous chemicals | Low purity of nucleic acids | [35, 36] |
| (6) CTAB extraction | Efficient method for plant and other “hard to lyse” samples | Laborious, time-consuming; use of hazardous chemicals | [38] |