Table 1:

Datasets used for benchmarking

Organism	Reference	Download source	Sequencing kit	Flow cell	Reference	Short form in
	genome			chemistry		paper
E. coli K12	E. coli str. K-12 substr. MG1655	http://dx.doi.org/10.5524/100102	SQK-MAP-002	R7	[4]	E. coli R7 dataset
E. coli K12	E. coli str. K-12 substr. MG1655	ENA: ERX708228, ERX708229, ERX708230, ERX708231	SQK-MAP-003 SQK-MAP-004	R7.3	[6]	E. coli R7.3 dataset
E. coli K12	E. coli str. K-12 substr. MG1655	ENA: ERX947749, ERX947750	SQK-MAP-005.1	R7.3	[18]	E. coli UCSC dataset
E. coli K12	E. coli str. K-12 substr. MG1655	http://s3.climb.ac.uk/nanopore/	Rapid 1D	R9	[19]	E. coli R9 1D dataset
E. coli K12	E. coli str. K-12 substr. MG1655	http://s3.climb.ac.uk/nanopore/	SQK-MAP-006	R9	[19]	E. coli R9 2D dataset
S. cerevisiae W303	S. cerevisiae S288C	http://schatzlab.cshl.edu/data/nanocorr/	NA	R7	[20]	Yeast dataset