| Deposited Data |
|
| Cell Line Copy Number Data |
Iorio et al., 2016 |
ftp://ftp.sanger.ac.uk/pub/project/cancerrxgene/releases/release-6.0/Gene_level_CN.xlsx |
| Cell Line Exome Data |
Iorio et al., 2016 |
http://www.cancerrxgene.org/gdsc1000/GDSC1000_WebResources//Data/suppData/TableS2C.xlsx |
| Achilles v2 shRNA data |
Cowley et al., 2014 |
https://ndownloader.figshare.com/files/3178886 |
| COLT shRNA data |
Marcotte et al., 2012 |
http://dpsc.ccbr.utoronto.ca/cancer/datasets.html; RRID: SCR_006485 |
| Wang et al., CRISPR data |
Wang et al., 2017 |
Table S3 in Wang et al. |
|
Marcotte et al., 2016 Breast Cancer shRNA data |
Marcotte et al., 2016 |
https://github.com/neellab/bfg/blob/gh-pages/data/shrna/breast_zgarp.txt.zip?raw=true |
| Kinome siRNA data |
Campbell et al., 2016 |
Table S1B |
| STRING interactions |
Szklarczyk et al., 2015 |
http://string-db.org/download/protein.links.v10/9606.protein.links.v10.txt.gz; RRID: SCR_005223 |
| Drug Target Information |
Wagner et al., 2016 |
http://dgidb.genome.wustl.edu/; RRID: SCR_006608 |
| Gene names and synonyms |
Gray et al., 2015 |
ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/hgnc_complete_set.txt; RRID: SCR_002827 |
|
| Software and Algorithms |
|
| Django |
Django Software Foundation |
https://www.djangoproject.com/; RRID: SCR_012855 |
| JQuery |
jQuery Foundation |
https://jquery.com/ |
| Python version 3.4 |
Python Software Foundation |
https://www.python.org/; RRID: SCR_008394 |
| R version 3.3.1 |
R Foundation for Statistical Computing |
https://www.r-project.org/; RRID: SCR_001905 |
| Intercell Analysis Scripts |
Campbell et al., 2016 |
https://github.com/GeneFunctionTeam/kinase-dependency-profiling |
| CancerGD Python / Javascript / R / HTML code |
This study |
https://github.com/cancergenetics/cancergd |
