Table 5.
Prototype repeat sequences (Arabidopsis thaliana genome) that matched genes or annotated AtRepBase repeats
| Class number | Class size | Genes | Repeats |
| 1 | 30,975 | Hypothetical protein | ATR0081 minisatellite 1 from 63767 to 63826 |
| 12639 | 202 | AC002534 ATR0058 | |
| 56 | 164 | Hypothetical protein | |
| 42 | 135 | ATR0087 | |
| 284 | 135 | Pseudogene | |
| 6 | 133 | Hypothetical protein | |
| 20 | 111 | Putative O-methyltransferase 1 | |
| 54 | 111 | Putative reverse transcriptase | |
| 62 | 107 | Hypothetical protein | |
| 95 | 85 | Hypothetical protein | |
| 1389 | 85 | Putative receptor kinase | |
| 269 | 81 | Putative receptor kinase | |
| 58 | 78 | Putative retroelement pol polyprotein | |
| 236 | 71 | Putative disease resistance protein | |
| 18068 | 67 | Putative Ser/Thr kinase | |
| 5 | 64 | Pseudogene | |
| 29 | 64 | Hypothetical protein | |
| 400 | 57 | Hypothetical protein | |
| 12310 | 56 | Hypothetical protein | U65470 ATR0043 |
| 187 | 55 | Hypothetical protein | |
| 38 | 50 | Putative NBS/LRR disease resistance protein | |
| 47 | 48 | Putative phenylalanine ammonia-lyase | |
| 104 | 46 | M65137 ATR0025 | |
| 345 | 45 | Pseudogene | |
| 12594 | 45 | Putative reverse transcriptase | |
| 735 | 45 | Hypothetical protein | |
| 240 | 43 | Putative disease-resistance protein | |
| 167 | 42 | Pseudogene | |
| 60 | 41 | Hypothetical protein | |
| 211 | 41 | ||
| 81 | 39 | Hypothetical protein | |
| 124 | 38 | Hypothetical protein | |
| 411 | 38 | Putative disease-resistance protein | |
| 324 | 37 | X93607 ATR0046 | |
| 170 | 37 | ATR0084 repeat 5 from 102144 to 105991 | |
| 421 | 37 | AF024504 ATR0056 | |
| 293 | 36 | Hypothetical protein | repeat01 ATR0090 |
| 357 | 35 | Pseudogene | |
| 426 | 34 | CHP-rich zinc finger protein-like | |
| 22466 | 32 | Hypothetical protein | |
| 64 | 32 | Hypothetical protein | |
| 242 | 32 | Hypothetical protein | |
| 249 | 31 | Putative cytochrome P450 | |
| 18597 | 31 | Putative transposon protein | |
| 256 | 31 | Putative serine carboxypeptidase | |
| 202 | 30 | Hypothetical protein | |
| 290 | 30 | Pseudogene | |
| 18166 | 29 | Putative CHP-rich zinc finger protein | |
| 12400 | 29 | Hypothetical protein | |
| 297 | 29 | Mutator-like transposase | ATR0089 |