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. Author manuscript; available in PMC: 2017 Jul 29.
Published in final edited form as: Annu Rev Biomed Eng. 2016 Jul 11;18:387–412. doi: 10.1146/annurev-bioeng-112415-114722

Table 1. Open-source and commercial image analysis platforms for image analysis and biomarker quantification from digital pathology and multiplexed immunohistochemical (IHC) images.

Digital pathology software Capabilities and features
Precision (Aperio) Stain separation, cell counting, separation of broad tissue classes
inForm (Caliper) Separation of broad tissue classes
Virtuoso (Ventana) Quantification of IHC staining
Halo (Indica) Segmentation, analysis
Visiopharm Segmentation, feature analysis of angiogenesis, bone growth, neural structure; cancer detection
TissueStudio Image analysis of IHC staining
Developer XD (Definiens) Separation of broad classes and features on the basis of shape, morphology, color of segmented objects
FARSIGHT Optical microscopy applications, focusing on fluorescence
ImageJ Java image analysis package designed with an open architecture to provide extensibility via plugins; recent push to integrate digital pathology images