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. 2017 Jul 27;91(16):e00158-17. doi: 10.1128/JVI.00158-17

TABLE 1.

Data generated in this study and summary of the viruses identified

Locatione Colony Data generated (no. of reads, data yield [Gb])b Virus or pathogen(s) present
Known virus(es) Novel virus(es)d Other
The Netherlands, AWD NE_AWD_1151 45,393,799, 9.08 DWV, SBV, BQCV, LSV-NEc ADV Nosema apis
NE_AWD_1442 43,418,765, 8.69 DWV, SBV, BQCV ARV-1, ARV-2 Lotmaria passim
South Africa, RI and SB SA_RI_A 20,107,219, 4.02 DWV ABV-1, ABV-2, ANV-1 Lotmaria passim
SA_RI_11 20,515,230, 4.10 DWV ABV-1, AFV-1 Lotmaria passim
SA_RI_49 18,820,078, 3.76 DWV, SBV, BQCV, ABPV ARV-1, ARV-2, ABV-1 Lotmaria passim
SA_SB_C1 44,731,233, 8.95 DWV, SBV, BQCV, LSV-SA-1c Nosema apis
SA_SB_K2 42,022,291, 8.41 DWV, SBV, BQCV, LSV-SA-2c Nosema apis
Tonga, V and T T_V9 18,658,353, 3.93 DWV, SBV ARV-1
T_V10 21,309,419, 4.26 DWV ARV-1, ARV-2
T_T12a 21,141,746, 4.23 DWV, SBV, BQCV, LSV-TOc ARV-1, ARV-2
T_T23a 19,203,423, 3.84 DWV, SBV, BQCV, LSV-TOc ARV-1 Nosema ceranae, Leishmania sp.
a

Varroa-free colonies.

b

Determined by using 100-bp paired-end Illumina HiSeq sequencing.

c

LSV variants are presented in Fig. S1 in the supplemental material. NE, Netherlands; SA, South Africa; TO, Tonga.

d

Novel viruses are presented in Table 2 and 3.

e

AWD, Amsterdam Water Dunes; RI, Robben Island; SB, Stellenbosch; V, Vava'u; T, Tongatapu.