. 2017 Jul 27;91(16):e00158-17. doi: 10.1128/JVI.00158-17

TABLE 1.

Data generated in this study and summary of the viruses identified

Location^e	Colony	Data generated (no. of reads, data yield [Gb])^b	Virus or pathogen(s) present
Location^e	Colony	Data generated (no. of reads, data yield [Gb])^b	Known virus(es)	Novel virus(es)^d	Other
The Netherlands, AWD	NE_AWD_1151	45,393,799, 9.08	DWV, SBV, BQCV, LSV-NE^c	ADV	Nosema apis
	NE_AWD_1442	43,418,765, 8.69	DWV, SBV, BQCV	ARV-1, ARV-2	Lotmaria passim
South Africa, RI and SB	SA_RI_A	20,107,219, 4.02	DWV	ABV-1, ABV-2, ANV-1	Lotmaria passim
	SA_RI_11	20,515,230, 4.10	DWV	ABV-1, AFV-1	Lotmaria passim
	SA_RI_49	18,820,078, 3.76	DWV, SBV, BQCV, ABPV	ARV-1, ARV-2, ABV-1	Lotmaria passim
	SA_SB_C1	44,731,233, 8.95	DWV, SBV, BQCV, LSV-SA-1^c		Nosema apis
	SA_SB_K2	42,022,291, 8.41	DWV, SBV, BQCV, LSV-SA-2^c		Nosema apis
Tonga, V and T	T_V9	18,658,353, 3.93	DWV, SBV	ARV-1
	T_V10	21,309,419, 4.26	DWV	ARV-1, ARV-2
	T_T12^a	21,141,746, 4.23	DWV, SBV, BQCV, LSV-TO^c	ARV-1, ARV-2
	T_T23^a	19,203,423, 3.84	DWV, SBV, BQCV, LSV-TO^c	ARV-1	Nosema ceranae, Leishmania sp.

Varroa-free colonies.

Determined by using 100-bp paired-end Illumina HiSeq sequencing.

LSV variants are presented in Fig. S1 in the supplemental material. NE, Netherlands; SA, South Africa; TO, Tonga.

Novel viruses are presented in Table 2 and 3.

AWD, Amsterdam Water Dunes; RI, Robben Island; SB, Stellenbosch; V, Vava'u; T, Tongatapu.