TABLE 3.
Abundances and prevalences of novel viruses in sampled colonies
| Novel virus | Location | Sample | Abundance estimation (TPM) | Avg fold coverage |
|---|---|---|---|---|
| ARV-1 | The Netherlands | NE_AWD_1442 | 47.75 | 235 |
| South Africa, RI | SA_RI_49 | 132.42 | 571 | |
| Tonga, Vava'u | T_V9 | 186.4 | 705 | |
| T_V10 | 55.3 | 263 | ||
| Tonga, Tongatapu | T_T12 | 546.98 | 3,023 | |
| T_T23 | 348.21 | 2,232 | ||
| ARV-2 | South Africa, RI | SA_RI_49 | 8.73 | 62 |
| Tonga, Vava'u | T_V10 | 17.09 | 86 | |
| Tonga, Tongatapu | T_T12 | 5.49 | 32 | |
| The Netherlands | NE_AWD_1442a | 1.79 | 5 | |
| ABV-1 | South Africa, RI | SA_RI_A | 65.51 | 398 |
| SA_RI_11 | 57.78 | 337 | ||
| SA_RI_49a | 1.25 | 1 | ||
| ABV-2 | South Africa, RI | SA_RI_A | 222.05 | 1,375 |
| AFV | South Africa, RI | SA_RI_A | 30.9 | 187 |
| ADV | The Netherlands | NE_AWD_1151 | 1.71 | 13 |
| ANV | South Africa, RI | SA_RI_11a | 1.53 | 4 |
a
Multiple were contigs formed (partial genome). The TPM reported is the average for all contigs.