Table 2.
Gene | Variant | Homozygous Wildtype Frequency Observed | Heterozygous Frequency Observed | Homozygous Variant Frequency Observed | Undeter-Mined | Major Allele Frequency Observed (Expected) | Minor Allele Frequency Observed (Expected) | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
SLC22A2 (OCT2) | rs316019 * | C/C | 0.679 | A/C | 0.187 | A/A | 0.014 | 0.120 | C | 0.824 (0.79) | A | 0.118 (0.21) |
rs3127573 | A/A | 0.737 | A/G | 0.211 | G/G | 0.010 | 0.043 | A | 0.858 (0.88) | G | 0.10 (0.12) | |
rs2279463 | A/A | 0.665 | A/G | 0.201 | G/G | 0.005 | 0.014 | A | 0.869 (0.88) | G | 0.097 (0.12) | |
rs596881 | C/C | 0.741 | C/T | 0.230 | T/T | 0.010 | 0.019 | C | 0.861 (0.89) | T | 0.098 (0.11) | |
SLC31A1 (CTR1) | rs7851395 | A/A | 0.306 | A/G | 0.431 | G/G | 0.187 | 0.077 | A | 0.553 (0.53) | G | 0.431 (0.47) |
rs12686377 | C/C | 0.718 | A/C | 0.158 | A/A | 0.038 | 0.086 | C | 0.847 (0.92) | A | 0.194 (0.08) | |
SLC47A1 (MATE1) | rs2289669 | G/G | 0.278 | A/G | 0.464 | A/A | 0.196 | 0.062 | G | 0.527 (0.54) | A | 0.443 (0.46) |
ABCC2 (MRP2) | rs717620 | C/C | 0.603 | C/T | 0.258 | T/T | 0.043 | 0.096 | C | 0.776 (0.81) | T | 0.207 (0.19) |
rs2273697 * | G/G | 0.531 | A/G | 0.325 | A/A | 0.053 | 0.091 | G | 0.729 (0.82) | A | 0.23 (0.18) | |
rs3740066 | C/C | 0.397 | C/T | 0.368 | T/T | 0.144 | 0.091 | C | 0.63(0.62) | T | 0.379 (0.38) | |
GGT1 | rs4820599 | A/A | 0.464 | A/G | 0.349 | G/G | 0.100 | 0.086 | A | 0.681 (0.73) | G | 0.316 (0.27) |
GSTP1 | rs1695 * | A/A | 0.354 | A/G | 0.402 | G/G | 0.129 | 0.033 | A | 0.63(0.59) | G | 0.372 (0.41) |
KEAP1 | rs11085735 | C/C | 0.746 | A/C | 0.139 | A/A | 0.014 | 0.100 | C | 0.864 (0.91) | A | 0.118 (0.09) |
rs1048290 | C/C | 0.282 | C/G | 0.407 | G/G | 0.129 | 0.182 | C | 0.531 (0.68) | G | 0.359 (0.32) | |
NFE2L2 (NRF2) | rs2886162 | A/A | 0.239 | A/G | 0.459 | G/G | 0.220 | 0.081 | A | 0.489 (0.58) | G | 0.469 (0.42) |
rs1806649 | C/C | 0.512 | C/T | 0.311 | T/T | 0.053 | 0.124 | C | 0.716 (0.77) | T | 0.23 (0.23) | |
rs1962142 | G/G | 0.000 | A/G | 0.670 | A/A | 0.244 | 0.086 | G | 0(0.92) | A | 0.494 (0.08) | |
rs2706110 | C/C | 0.560 | C/T | 0.344 | T/T | 0.086 | 0.010 | C | 0.748 (0.8) | T | 0.293 (0.2) | |
rs6721961 | G/G | 0.665 | G/T | 0.225 | T/T | 0.024 | 0.091 | G | 0.815 (0.8) | T | 0.155 (0.2) |
* Denotes non-synonymous variant.