| AID | Activation-induced cytidine deaminase |
| ANS | Autonomic nerve system |
| CD | Cluster of differentiation |
| CNS | Central nervous system |
| CXCL16 | Chemokine (C-X-C motif) ligand 16 |
| EAE | Experimental autoimmune encephalomyelitis |
| ENS | Enteric nervous system |
| FoxP3 | Forkhead box P3 |
| GABA | Gamma-aminobutyric acid |
| GALT | Gut-associated lymphatic tissue |
| HPA axis | Hypothalamic–pituitary–adrenal axis |
| IBD | Inflammatory bowel disease |
| IFN | Interferon |
| IgA | Immunoglobulin A |
| IL | Interleukin |
| ILC | Innate immune lymphoid cell |
| MAMP | Microbial-associated molecular pattern |
| MS | Multiple sclerosis |
| NK cell | Natural killer cell |
| NMO | Neuromyelitis optica |
| PD-1 | Programmed cell death 1 |
| PSA | Polysaccharide A |
| RORγt | Retinoic acid receptor-related orphan receptor-γt |
| SCFA | Short-chain fatty acids |
| SFB | Segmented filamentous bacteria |
| TGFβ1 | Transforming growth factor β1 |
| Th1 cell | T helper cell type 1 |
| Th17 cell | T helper cell type 17 |
| TLR | Toll-like receptors |
| TNFα | Tumor necrosis factor α |
| Treg cell | Regulatory T cell |