(A$\beta$)	$\beta$-amyloid
ACAT1	Acyl-CoA:cholesterol acyltransferase
Akt	Serine/threonine protein kinase
ALS	Amyotrophic lateral sclerosis
Alzheimer’s disease	AD
AMPK	AMP-activated protein kinase
ApoE4	Apolipoprotein E
APP	Amyloid precursor protein
ATAD3	AAA domain-containing protein 3
Bak	Bcl2 antagonist/killer
Bax	Bcl-2 associated X protein
Bcl-2	B-cell CLL/lymphoma 2
Bcl-xL	Antiapoptotic protein Bcl-xL
BiP	Binding immunoglobulin protein, also known as 78-kDa glucose-regulated protein
CerS	Ceramide synthase
cyt. c	Cytochrome c
ddFP	Dimerization-dependent fluorescent protein
DES	Dihydroceramide synthase
DGAT2	Diacylglycerol O-acyltransferase
Drp1	Dynamin-related protein 1
EM	Electron microscopy
ER	Endoplasmic reticulum
ERMES	ER-mitochondria encounter structure
Ero1-$\alpha$	ER oxidoreductin-1 $\alpha$
ERp44	Endoplasmic reticulum resident protein 44
ERp57	Protein disulfide-isomerase A3, also known as 58-kDa glucose-regulated protein
ET	Electron tomography
FACL4/ACS4	Fatty acid CoA ligase 4
FATE1	Fetal and adult testis-expressed transcript protein
FKBP	Rapamycin-binding protein
FP	Fluorescent protein
FRB	FKBP-rapamycin binding domain of mTOR
FRET	Fluorescence recovery after photobleaching
FUS	RNA-binding protein FUS
GRP75	Glucose-regulated protein 75
HK2	Hexokinase 2
H-Ras	GTPase HRas
ICS	Image correlation spectroscopy
IP3	Inositol 1,4,5-trisphosphate
IP3R	Inositol 1,4,5-trisphosphate receptor
K-Ras	GTPase KRas
MAM	Mitochondria-associated membranes
MARCH5/MITOL	E3 ubiquitin-protein ligase MARCH5
Mcl-1	Induced myeloid leukemia cell differentiation protein Mcl-1
Mcl-1L	Mcl-1 long isoform
MCU	Mitochondrial calcium uniporter
Mdm36	Mitochondrial distribution and morphology protein 36
MERC	Mitochondria-ER contacts
MFN	Mitofusin
MiD	Mitochondrial dynamics protein
mPTP	Mitochondrial permeability transition pore
mtDNA	Mitochondrial DNA
mTOR	Mammalian target of rapamycin
NF-$\kappa$B	Nuclear factor $\kappa$B
Num1	Nuclear migration protein 1
OMM	Outer mitochondrial membrane
Orai1	ORAI calcium release-activated calcium modulator 1
p53	Tumor protein p53
p66Shc	SHC-Transforming protein 1
PA	Phosphatidic acid
PAM	Plasma membrane-associated membranes
PC	Phosphatidylcholine
PE	Phosphatidylethanolamine
PEMT2	Phosphatidylethanolamine N-methyltransferase 2
PERK	Protein kinase R (PKR)-like ER kinase
PL	Phospholipid
PM	Plasma membrane
PML	Promyelocytic leukemia protein
PP2A	Serine/threonine-protein phosphatase PP2A
Preg	Pregnolone
PS	Phosphatidylserine
PSD	PS decarboxylase
PSS1	PS synthase 1
PSS2	PS synthase 2
PTEN	Phosphatase and tensin homolog deleted on chromosome 10
ROS	Reactive oxygen species
Sar1	Small COPII coat GTPase 1
SARA1	Mammalian homolog of Sar1
SCD1	Stearoyl-CoA desaturase 1 SCD1
SERCA	Sarco/endoplasmatic reticulum calcium ATPase
Sig1R	Sigma non-opioid intracellular receptor 1
SMAC/DIABLO	Second mitochondria-derived activator of caspases/direct IAP-binding protein with low PI
SMase	Sphingomyelin phosphodiesterase
SOAT1	Acyl-CoA:sterol O-acyltransferase
SOC	Store-operated calcium entry
SOD1	Cu/Zn superoxide dismutase
StAR	Steroidogenic acute regulatory protein
STIM1	Stromal interaction molecule 1
T2DM	Diabetes mellitus type 2
TDP-43	TAR DNA-binding protein 43
Tom20	Mitochondrial import receptor subunit TOM20
Ulk1	Unc-51-like kinase 1
UPR	Unfolded protein response
VAPB	Vesicle-associated membrane protein-associated protein B/C
VCP	Transitional endoplasmic reticulum ATPase
VDAC	Voltage-dependent anion channel
VDAC2	Voltage-dependent anion-selective channel protein 2