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. 2017 Jul 22;18(7):1591. doi: 10.3390/ijms18071591

Table 3.

Expression fold change of the genes investigated in the present study, from Head and Neck Squamous Cell Carcinoma and Oral Cavity Squamous Cell Carcinoma databases.

Head and Neck Squamous Cell Carcinoma Oral Cavity SquamousCell Carcinoma
Ginos Dataset Cromer Dataset Peng Dataset Toruner dataset
Cancer vs. Normal Cancer vs. Normal Cancer vs. Normal Cancer vs. Normal
n Protein Gene Fold Change p Value Fold Change p Value Fold Change p Value Fold Change p Value
1 p16INK4a CDKN2A 2.297 6.27 × 10−5 −1.415 0.712 1.684 1.21 × 10−7 1.372 0.047
p16INK4a Downstream Genes
2 CDK4 CDK4 1.842 8.84 × 10−12 2.63 8.00 × 10−6 1.498 3.76E−08 2.13 6.31 × 10−4
3 Cyclin D1 CCND1 1.465 0.023 2.031 5.97 × 10−5 −1.112 0.907 1.201 0.164
4 pRB RB1 1.372 8.92 × 10−4 1.165 0.429 1.2 0.018 1.579 0.005
5 p107 RBL1 n.a. n.a. −2.032 0.97 1.334 4.47 × 10−4 n.a. n.a.
6 p130 RBL2 1.081 0.172 −1.449 0.774 −1.228 0.997 1.141 0.046
7 E2F1 E2F1 1.347 0.046 1.754 1.00 × 10−6 1.032 0.313 1.083 0.05
8 E2F2 E2F2 −1.329 0.856 −1.147 0.813 −1.424 1 1.044 0.172
9 E2F3 E2F3 2.945 7.20 × 10−8 1.948 0.159 1.099 4.19 × 10−15 1.231 0.284
10 E2F4 E2F4 1.131 0.025 1.462 0.014 1.415 1.28 × 10−11 −1.178 1.00
Epigenetic Regulator Genes
11 DNMT1 DNMT1 1.706 2.00 × 10−7 1.581 0.124 1.499 1.87 × 10−15 1.457 2.00 × 10−3
12 DNMT3A DNMT3A −1.046 0.584 n.a. n.a. 1.01 0.37 −1.038 0.644
13 DNMT3B DNMT3B 1.37 5.19 × 10−4 n.a. n.a. 1.512 3.82 × 10−8 1.296 0.009
14 Bmi-1 BMI1 1.818 3.23 × 10−7 1.627 5.16 × 10−5 −1.046 0.689 1.708 2.78 × 10−7
15 Ezh1 EZH1 1.238 0.011 1.383 0.083 1.131 6.00 × 10−2 1.259 0.03
16 Ezh2 EZH2 −1.325 0.88 −1.151 0.833 −1.401 1.000 1.021 0.4
17 EED EED 1.495 3.89 × 10−4 1.118 0.286 1.349 3.12 × 10−7 1.112 0.013
18 CBX4 CBX4 −1.133 0.750 −1.132 0.613 −1.183 0.999 −1.04 0.817
19 CBX7 CBX7 −1.429 0.992 n.a. n.a. −1.311 1 −1.24 1
20 Jarid2 JARID2 1.123 0.045 1.17 0.039 1.2 0.002 1.365 0. 948
21 JMJD3 JMJD3 1.039 0.292 1.127 0.116 1.088 0.174 −1.229 0.924
22 JDP2 JDP2 n.a. n.a. n.a. n.a. −1.214 1 n.a. n.a.
23 SETD8 KMT5A −1.375 0.999 n.a. n.a. 1.058 0.214 1.097 2.19 × 10−4
24 KMT2A MLL −1.185 0.974 −1.252 0.901 1.179 0.005 1.11 0.215
25 HAT p300 EP300 1.054 0.327 −1.196 0.737 1.141 0.006 −1.146 0.904
26 HDAC HDAC1 −1.075 0.83 1.361 0.054 1.174 0.016 1.883 1.42 × 10−4
27 HDAC HDAC2 1.613 1.41 × 10−4 1.181 0.241 1.066 0.151 1.265 0.029
28 p63 TP63 1.491 0.001 1.717 0.019 1.238 2.68 × 10−4 1.12 0.021
29 BRG1 SMARCA4 1.047 0.309 −1.543 0.960 1.001 0.416 1.175 9.28 × 10−4
30 LSH HELLS 2.463 0.013 n.a. n.a. 1.617 6.24 × 10−6 1.445 0.004
31 Satb1 SATB1 1.025 0.396 −2.039 0.92 −1.496 0.997 −1.685 1
32 CTCF CTCF 1.003 0.478 1.292 0.018 −1.114 0.998 1.29 0.097
Transcriptional Regulator Genes
33 Ets1 ETS1 1.694 0.001 2.076 0.016 2.111 2.97 × 10−10 −1.114 1
34 Ets2 ETS2 1.78 1.76 × 10−6 1.761 0.012 −1.102 0.908 −1.218 0.618
35 ID1 ID1 1.356 0.015 1.375 0.278 1.21 0.025 1.242 0.317
36 ID2 ID2 1.765 1.79 × 10−4 2.022 0.258 1.066 0.193 1.038 0.362
37 ID3 ID3 3.023 2.14 × 10−4 n.a. n.a. 1.072 0.208 1.043 0.447
38 YB1 YXB1 1.421 0.001 1.644 6.26 × 10−4 −1.362 0.998 1.637 0.001
39 SP1 SP1 1.292 0.95 −1.382 0.717 −1.232 1 1.008 0.372
40 HBP1 PBRM1 −1.131 0.716 n.a. n.a. −1.303 1.00 1.039 0.137
41 b-myb MYB 1.003 0.495 1.414 0.13 −1.842 1 1.134 0.229
42 JUNB JUNB 1.38 0.006 1.252 0.093 1.003 0.485 −1.029 0.552
43 c-Jun C-JUN 1.549 1.13 × 10−5 1.18 0.083 1.318 0.008 −1.093 0.508
44 JunD JUND −1.048 0.549 1.176 0.05 −1.227 0.999 1.045 0.086
45 c-Fos C-FOS 13.503 2.88 × 10−5 1.481 0.212 −1.415 0.956 1.225 0.365
46 FosB FOSB 3.016 0.005 1.385 0.021 −1.042 0.527 −1.881 1
47 FRA1 FOSL1 1.663 0.076 −1.194 0.922 1.2 0.045 −3.719 0.946
48 FRA2 FOSL2 −1.355 0.997 1.13 0.205 −2.032 1 −1.149 0.909
49 PPARalpha PPARA −1.043 0.406 −1.134 0.585 −1.079 0.984 1.021 0.104
50 ANRIL CDKN2BAS n.a. n.a. n.a. n.a. 1.802 8.85 × 10−12 n.a. n.a.

The table shows the tumors types, dataset names, and complete list of genes investigated in the present study, from Oncomine database (www.oncomine.org). Statistically significant expression fold changes (p ≤ 0.05) are labeled: fold change ≥ 2 (green); fold change < 2 (light green); n.a.: not available data.