Table 2.
Parameters for αIIbβ3–Peptide Complexes Obtained Using the Umbrella Sampling Simulations: ΔGb, Binding Energy; Δxb, Width of the Bound State Basin; Δx‡, Transition State Distancea
| peptide | ΔGb, kcal/mol | Δx‡, nm | Δxb, nm |
|---|---|---|---|
| γC-12 and open αIIbβ3 | 13.5 (29.2) | 1.9 (5.1) | 0.75 (0.81) |
| γC-12 and closed αIIbβ3 | 13.9 (37.5) | 2.2 (4.6) | 0.71 (0.76) |
| cyclic RGDFK and open αIIbβ3 | 16.1 | 2.6 | 0.79 |
| cyclic RGDFK and closed αIIbβ3 | 15.6 | 2.0 | 0.70 |
Values obtained without suppression of γC-12 forced unraveling are given in parentheses.