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. Author manuscript; available in PMC: 2018 Apr 4.
Published in final edited form as: Biochemistry. 2017 Mar 22;56(13):1932–1942. doi: 10.1021/acs.biochem.6b01113

Table 2.

Parameters for αIIbβ3–Peptide Complexes Obtained Using the Umbrella Sampling Simulations: ΔGb, Binding Energy; Δxb, Width of the Bound State Basin; Δx, Transition State Distancea

peptide ΔGb, kcal/mol Δx, nm Δxb, nm
γC-12 and open αIIbβ3 13.5 (29.2) 1.9 (5.1) 0.75 (0.81)
γC-12 and closed αIIbβ3 13.9 (37.5) 2.2 (4.6) 0.71 (0.76)
cyclic RGDFK and open αIIbβ3 16.1 2.6 0.79
cyclic RGDFK and closed αIIbβ3 15.6 2.0 0.70
a

Values obtained without suppression of γC-12 forced unraveling are given in parentheses.