Table 2.
Normalised reads of honeybee viruses detected from Region 1 to 4 defined in Fig. 1 with the most prevalent virus in each region in bold.
| Sample | BQCV | LSV1 | SBV | LSV2 | IAPV | DWV1 | SBPV2 | CBPV |
|---|---|---|---|---|---|---|---|---|
| VIC/NSW-1 | 24.7M | 101,677 | 6.3M | 175,440 | 550,000 | 116 | 0 | 0 |
| VIC/NSW-2 | 7.6M | 87,469 | 9.8M | 59,982 | 24.7M | 4 | 15 | 1 |
| VIC/NSW-3 | 21.2M | 215,972 | 155,404 | 1.3M | 9.7M | 1 | 8 | 0 |
| SA | 6.8M | 3.6M | 9.3M | 1.3M | 3.4M | 0 | 0 | 0 |
| QLD | 21.9M | 1M | 572,995 | 509,751 | 9.2M | 211 | 38 | 3 |
| WA-1 | 35.1M | 2,666 | 1M | 24,957 | 2,837 | 0 | 3 | 0 |
| WA-2 | 22.2M | 11,794 | 7.3M | 242,115 | 3,605 | 141 | 9 | 0 |
| TAS | 30.4M | 499,235 | 4.7M | 116,419 | 55,483 | 2 | 1 | 1 |
| NT | 6,199 | 490,875 | 4,258 | 17,897 | 2,622 | 991 | 88 | 0 |
Reads for DWV and SBPV strains are mapped with a similarity threshold of 0.7 and all other viruses are mapped with a similarity threshold of 0.9.
1virus complex including DWV-A, DWV-B and DWV-C master variants.
2virus complex including SBPV-Rothamstead and SBPV-Harpenden.