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. 2017 Jul 11;69(8):537–545. doi: 10.1007/s00251-017-0991-9

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© The Author(s) 2017

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

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Fig. 2 — Phylogenetic analysis of exon 2 of the Tasmanian devil MHC class I alleles deposited to the NCBI database. The Neighbour-Joining method with Jukes Cantor distance measurement (1000 bootstraps) was used for the analysis following the phylogenetic analysis of MHC class I in Cheng et al. (2012a). The following MHC class I sequences covering exon 2 of the class I genes were downloaded from NCBI and trimmed to 180 bp of exon 2, EF591089.1; JN397401.1; JN389437.1; JN389435.1; JN389434.1; GQ411488.1; GQ411484.1; GQ411476.1; GQ411466.1; GQ411464.1; GQ411462.1; GQ411460.1;GQ411458.1; GQ411456.1; GQ411452.1; GQ411448.1; GQ411444.1; GQ411442.1;GQ411438.1; GQ411491.1; GQ411493.1; GQ411489.1; GQ411485.1;GQ411483.1; GQ411481.1; GQ411479.1; GQ411471.1; GQ411467.1; GQ411465.1;GQ411463.1; GQ411459.1; GQ411457.1; GQ411455.1; GQ411451.1; GQ411447.1;GQ411441.1; GQ411439.1; GQ411437.1; GU363945.1; GQ411454.1; GQ411435.1; JN389438.1; GQ411443.1; GQ411440.1; KY194696.1; GQ411472.1; KT188437.1; JN397398.1; GQ411482.1. MHC class I sequences were excluded if they did not include sequence for exon 2 of the class I gene. The MHC class I gene of each of the clades has been suggested based on the phylogenetic analysis by Cheng et al. (2012a). The MHC class I alleles expressed by DFT1 are underlined in red (colour figure online)