TABLE 1 .
Biological replicate and sample |
Total no. of reads | % reads with no Tn sequence |
No. of reads too short |
No. of reads used for analysis |
ARb (%) | NFc | Total no. of normalized reads |
No. of reads/Tn site |
---|---|---|---|---|---|---|---|---|
Biological replicate 1 | ||||||||
Input | 21,652,251 | 5.20 | 36,631 | 20,489,022 | 80.40 | 0.844 | 18,274,500 | 129 |
Nontreated | 20,304,098 | 6.94 | 29,769 | 18,865,247 | 80.09 | 0.920 | 18,679,770 | 119 |
NCR247 treated | 20,121,669 | 8.14 | 34,245 | 18,450,409 | 80.80 | 0.921 | 18,532,057 | 116 |
PMB treated | 18,401,067 | 7.18 | 30,931 | 17,049,767 | 80.66 | 0.998 | 18,364,265 | 107 |
Biological replicate 2 | ||||||||
Input | 20,153,000 | 12.72 | 30,042 | 17,560,139 | 81.50 | 0.943 | 19,004,279 | 111 |
Nontreated | 22,731,094 | 7.97 | 33,510 | 20,885,738 | 80.66 | 0.811 | 18,434,917 | 132 |
NCR247 treated | 18,798,923 | 7.77 | 30,051 | 17,307,732 | 80.11 | 1.000 | 18,798,923 | 109 |
PMB treated | 18,906,038 | 8.75 | 28,138 | 17,224,367 | 79.88 | 0.994 | 18,792,602 | 109 |
Tn, transposon.
AR, alignment rate.
NF, normalization factor as determined by normalizing all samples to the sample with the lowest number of intergenic reads.