Table 4.

Exonic or 5′ UTR polymorphisms significantly associated with chain length distribution (CLD) trait variation in pea lines and their predicted effects on translation product sequence

Candidate gene	Alignment PopSet number	Site on alignment	Variant	Effects (site on reference sequence translation)
AGPS2	694,187,965	145	T/C	In exon; CTT / CTC, leucine -> leucine, synonymous
UGPase	694,186,492	336	T/C	Variant in the first base of the exon, adjacent to a predicted intron acceptor site; codon change AGT / AGC, serine -> serine, synonymous
Starch synthase II (rug5)	1,206,484,033	307	G/A	In exon; GGT / AGT, glycine -> serine (249), non-synonymous
AGPL1 (rb)	694,185,424	9	A/C	In 5′ UTR