Table 1. Characteristics of the initial metabolic network reconstructions.
S1 | S2 | |
---|---|---|
Total reads | 205,850,654 | 153,838,374 |
Total Contigs | 2,001,060 | 1,485,172 |
N50 | 2,124 | 2,328 |
Contig mean sequence length | 426 ± 433 bp | 446 ± 569 bp |
Mean GC percent | 56 ± 7% | 54 ± 9% |
Predicted Proteins | 2,064,635 | 1,565,352 |
Initial reactions | 2,334 | 2,082 |
Initial metabolites | 2,237 | 2,153 |
Enzymes | 1,617 | 1,483 |
Generic reactions removed | 213 | 66 |
Compartmentalized reactions | 3,440 | 3,235 |
Compartmentalized metabolites | 3,142 | 2,968 |
Transport reactions | 740 | 740 |
S1: Non-intervened soil sample; S2: Agriculturally-intervened soil sample.