Table 3.

Concatenated data matrix statistics

Matrix	Taxon set	Gene set	Alignment method	Alignment length (nt)	Matrix completeness	Ambiguous characters
mat_1	bcsl_114	all_core	prank	508,158	97.9%	0.4%
mat_2	bcsl_114	hamstr_core	mafft	502,005	98.4%	0.0%
mat_3	bcsl_114	hamstr_core_mges_removed	mafft	486,546	98.4%	0.0%
mat_4	bcsl_114	hamstr_core_mges_removed + PhiPack sites removed	mafft	134,225	98.0%	0.0%
mat_5	bcsl_114	hamstr_full_mges_removed	mafft	7,962,138	47.4%	0.0%
mat_6	bcsl_498	hamstr_full_mges_removed	mafft	8,207,628	66.1%	0.1%