Model for CTD-mediated coordination of AGO4 transcript cleavage and RRP6L1 engagement of cleaved RNA 3′ ends. AGO4 and RRP6L1 bind adjacent subdomains of the NRPE1 CTD, such that co-transcriptional slicing of Pol V transcripts by AGO4, guided by basepaired 24 nt siRNAs, may be coupled to RRP6L1 engagement of cleaved RNA 3′ ends. RRP6L1’s trimming of Pol V transcripts, with pausing at sites of secondary structure, may facilitate RNA retention, allowing Pol V transcript-binding proteins, such as the IDP complex, to recruit the de novo cytosine methyltransferase, DRM2 to cleaved RNAs while Pol V transcription of nascent RNA continues.