Table 1. Selected top 10 altered expression of circRNAs in HSCC tissues by fold change (FC).
Top 10 upregulated circRNAs | ||||||
---|---|---|---|---|---|---|
CircRNA ID | FC | P value | Chromosome | Strand | Gene symbol | No. miRNA targets |
hsa_circ_0024109 | 40.295 | 0.009 | 11 | − | MMP1 | 12 |
hsa_circ_0058143 | 30.341 | 0.022 | 2 | − | FN1 | 3 |
hsa_circ_0058104 | 27.735 | 0.003 | 2 | − | FN1 | 6 |
hsa_circ_0058106 | 26.222 | 0.014 | 2 | − | FN1 | 2 |
hsa_circ_0058121 | 25.540 | 0.018 | 2 | − | FN1 | 4 |
hsa_circ_0058107 | 23.066 | 0.002 | 2 | − | FN1 | 11 |
hsa_circ_0024108 | 22.409 | 0.007 | 11 | − | MMP1 | 10 |
hsa_circ_0058095 | 22.185 | 0.004 | 2 | − | FN1 | 21 |
hsa_circ_0058115 | 20.418 | 0.003 | 2 | − | FN1 | 28 |
hsa_circ_0058097 | 20.418 | 0.004 | 2 | − | FN1 | 159 |
Top 10 downregulated circRNAs | ||||||
hsa_circ_0003441 | 23.548 | 0.007 | 13 | + | TDRD3 | 0 |
hsa_circ_0001290 | 21.410 | 0.027 | 3 | − | SETD2 | 0 |
hsa_circ_0050108 | 21.133 | 0.003 | 19 | + | SSBP4 | 47 |
hsa_circ_0088635 | 20.274 | 0.005 | 9 | + | GARNL3 | 0 |
hsa_circ_0002260 | 20.023 | 0.039 | 5 | + | PAPD4 | 2 |
hsa_circ_0007646 | 19.457 | 0.031 | 4 | + | DCUN1D4 | 0 |
hsa_circ_0082212 | 18.660 | 0.019 | 7 | + | FLNC | 73 |
hsa_circ_0001189 | 17.691 | 0.006 | 21 | + | MORC3 | 3 |
hsa_circ_0036722 | 17.339 | 0.013 | 15 | − | RHCG | 24 |
hsa_circ_0087964 | 16.798 | 0.011 | 9 | − | LPAR1 | 885 |
CircRNA ID was based on circBase (http://www.circbase.org/).