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. 2017 Aug 3;13(8):e1005629. doi: 10.1371/journal.pcbi.1005629

Table 2. Probabilities of donor genotypes of a bi-allelic SNP conditioning on recipient genotype, donor population and IBD between one haploid pair of donor-recipient genomes.

The table shows P(Di1=d1,Di2=d2|Ri1=r1,Ri2=r2,IBDi=1;popm) for a bi-allelic SNPi, which has two possible alleles: A and B that are occur with frequency fA and fB in Popm respectively.

Donor genotype
Conditioning on the recipient genoptype AA AB or BA BB
AA fA fB 0
AB or BA 0.5fA (0.5fA + 0.5fB) 0.5fB
BB 0 fA fB