Table S1.
RT-qPCR–based validation of microarray experiments
Fold change transcription | P value transcription | Fold change polysome | P value polysome | Transcription (qPCR) | Translation | |||||||
Probe | Gene | Array | qPCR | Array | qPCR | Array | qPCR | Array | qPCR | Down in Lck−/− | Down in Lck−/− (array) | Down in Lck−/− (qPCR) |
A_55_P1980796 | Il2ra (CD25) | −1.32 | −1.29 | 0.006 | 0.431 | −3.57 | −2.80 | 0.001 | 0.041 | No | Yes | Yes |
A_51_P181286 | CD69 | 1.04 | 1.25 | 0.218 | 0.652 | −1.81 | −1.27 | 0.264 | 0.181 | No | No | No |
A_55_P1974877 | BclxL | 1.05 | 1.27 | 0.282 | 0.461 | −2.86 | −3.14 | 0.008 | 0.005 | No | Yes | Yes |
A_52_P1197913 | Gadd45b | 1.52 | 1.58 | 0.779 | 0.359 | −2.86 | −2.29 | 0.011 | 0.002 | No | Yes | Yes |
A_52_P108346 | Myc | 1.14 | 1.06 | 0.779 | 0.847 | −2.02 | −3.70 | 0.138 | 0.024 | No | No | Yes |
A_52_P99848 | Pik3cd | 1.37 | −1.11 | 0.994 | 0.794 | −2.21 | −1.64 | 0.088 | 0.043 | No | No | Yes |
A_52_P68893 | IFNg | 1.47 | 2.11 | 0.203 | 0.217 | −2.81 | −2.32 | 0.018 | 0.004 | No | Yes | Yes |
A_51_P391445 | Ifngr1 | 1.52 | 1.11 | 0.934 | 0.716 | −2.46 | −1.44 | 0.050 | 0.012 | No | Yes | Yes |
A_51_P286496 | Il2rb | 1.31 | −1.24 | 0.998 | 0.413 | −2.87 | −3.40 | 0.009 | 0.029 | No | Yes | Yes |
A_51_P470715 | Cish | 1.51 | −1.00 | 0.998 | 0.995 | −2.91 | −4.74 | 0.009 | 0.028 | No | Yes | Yes |
A_51_P279606 | Socs1 | 1.63 | −1.14 | 1.000 | 0.717 | −1.59 | −1.62 | 0.355 | 0.089 | No | No | No |
A_51_P474459 | Socs3 | 1.78 | −0.97 | 1.000 | 0.929 | −1.87 | −6.54 | 0.252 | 0.024 | No | No | Yes |
A_55_P2085157 | Eef1g | 1.07 | 1.01 | 0.975 | 0.986 | −1.30 | −1.19 | 0.477 | 0.478 | No | No | No |
A_66_P106191 | Eef2 | 1.06 | −1.34 | 0.882 | 0.305 | −1.98 | −1.86 | 0.204 | 0.225 | No | No | No |
A_55_P2128451 | Sfpq | −1.00 | 1.19 | 0.398 | 0.748 | −2.45 | −1.97 | 0.037 | 0.010 | No | Yes | Yes |
Total transcript abundance and polysome:subpolysome ratio of 15 genes involved in T-cell activation, signaling pathways, effector function, and survival were measured by quantitative PCR using the same biological samples as those used in the microarrays (n = 4, two-way t test, P value threshold 0.05). Validated significant P values are highlighted in bold.