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. 2001 May 15;29(10):2069–2078. doi: 10.1093/nar/29.10.2069

Table 4. Tm values and thermodynamic data for oligonucleotide duplexes containing purin-2,6-diamine 2′-deoxyribonucleoside 1 and pyrazolo[3,4-d]pyrimidine analogs 2a,ba.

 
Tm (°C)
ΔG0310 (kcal/mol)
5′-d(TAG GTC AAT ACT) (12)    
3′-d(ATC CAG TTA TGA) (13) 47 –10.6
5′-d(T1G GTC 11T 1CT) (14)    
3′-d(ATC C1G TT1 TGA) (15) 50b
5′-d(TAG GTC 2a2aT ACT) (16)    
3′-d(ATC C2aG TT2a TGA) (17) 51 –12.3
5′-d(TAG GTC AAT ACT) (12)    
3′-d(ATC C1G TT1 TGA) (15) 49 –10.9
5′-d(TAG GTC AAT ACT) (12)    
3′-d(ATC C2aG TT2a TGA) (17) 50 –12.1
5′-d(TAG GTC AAT ACT) (12)    
3′-d(ATC C2bG TT2b TGA) (18) 59 –13.9
5′-d(TAG GTC 2b2bT ACT) (21)    
3′-d(ATC CAG TT A TGA) (13) 56 –13.4
5′-d(TAG GTC 2b2bT ACT) (21)    
3′-d(ATC C2bG TT 2bTGA) (18) 67 –17.0
5′-d(T2bGGTC2b2bT2bCT) (19)    
3′-d(A TC CAG T T ATGA) (13) 64 –15.8
5′-d(TAG GTC AAT ACT) (12)    
3′-(AUC CAG UUA UGA) (20) 45 –10.2
5′-d(T1G GTC 11T 1CT) (14)    
3′-(AUC CAG UUA UGA) (20) 48 –10.2
5′-d(TAG GTC 2a2aT ACT) (16)    
3′-(AUC CAG UUA UGA) (20) 48
5′-d(TAG GTC 2b2bT ACT) (21)    
3′-(AUC CAG UUA UGA) (20) 53 –12.7

aMeasured at 260 nm in 0.1 M NaCl, 10 mM MgCl2 and 10 mM Na cacodylate buffer, pH 7.0, with 5 µM + 5 µM single strand concentrations.

bLow cooperativity.

cNot measured.