Table 4. Tm values and thermodynamic data for oligonucleotide duplexes containing purin-2,6-diamine 2′-deoxyribonucleoside 1 and pyrazolo[3,4-d]pyrimidine analogs 2a,ba.
|
Tm (°C) |
ΔG0310
(kcal/mol) |
5′-d(TAG GTC AAT ACT) (12) | ||
3′-d(ATC CAG TTA TGA) (13) | 47 | –10.6 |
5′-d(T1G GTC 11T 1CT) (14) | ||
3′-d(ATC C1G TT1 TGA) (15) | 50b | – |
5′-d(TAG GTC 2a2aT ACT) (16) | ||
3′-d(ATC C2aG TT2a TGA) (17) | 51 | –12.3 |
5′-d(TAG GTC AAT ACT) (12) | ||
3′-d(ATC C1G TT1 TGA) (15) | 49 | –10.9 |
5′-d(TAG GTC AAT ACT) (12) | ||
3′-d(ATC C2aG TT2a TGA) (17) | 50 | –12.1 |
5′-d(TAG GTC AAT ACT) (12) | ||
3′-d(ATC C2bG TT2b TGA) (18) | 59 | –13.9 |
5′-d(TAG GTC 2b2bT ACT) (21) | ||
3′-d(ATC CAG TT A TGA) (13) | 56 | –13.4 |
5′-d(TAG GTC 2b2bT ACT) (21) | ||
3′-d(ATC C2bG TT 2bTGA) (18) | 67 | –17.0 |
5′-d(T2bGGTC2b2bT2bCT) (19) | ||
3′-d(A TC CAG T T ATGA) (13) | 64 | –15.8 |
5′-d(TAG GTC AAT ACT) (12) | ||
3′-(AUC CAG UUA UGA) (20) | 45 | –10.2 |
5′-d(T1G GTC 11T 1CT) (14) | ||
3′-(AUC CAG UUA UGA) (20) | 48 | –10.2 |
5′-d(TAG GTC 2a2aT ACT) (16) | ||
3′-(AUC CAG UUA UGA) (20) | 48 | – |
5′-d(TAG GTC 2b2bT ACT) (21) | ||
3′-(AUC CAG UUA UGA) (20) | 53 | –12.7 |
aMeasured at 260 nm in 0.1 M NaCl, 10 mM MgCl2 and 10 mM Na cacodylate buffer, pH 7.0, with 5 µM + 5 µM single strand concentrations.
bLow cooperativity.
cNot measured.