Table 2. Thermal melting points for DNA 1–DNA 2 5 µM duplexes measured in 10 mM phosphate buffer pH 7.0 and either 100 or 500 mM NaCla.
DNA 1 sample | Tm (°C) | ΔTm | Tm (°C) | ΔTmb |
|
100 mM
NaCl |
100 mM NaCl |
500 mM
NaCl |
500 mM NaCla |
O-Propyl | 54.2 | +1.8 | 59.7 | +1.6 |
O-Methoxyethyl | 57.9 | +2.2 | 67.1 | +2.3 |
O-Aminopropyl | 39.7 | +0.3 | 43.4 | ∼0 |
Control (P=O) | 36.3 | – | 43.7 | – |
Fluoro (P=S) | 50.0 | +1.3 | 58.4 | +2.0 |
Control (P=S) | 36.8 | – | 38.7 | – |
aMaximum error in reported Tm values: ± 1.5°C.
bΔTm refers to [Tm(modified duplex) – Tm(control duplex)]/10, i.e. the difference in Tm per modification.