Table 1.
| a: Top 30 over expressed lncRNAs in PP skin | |||||||
|---|---|---|---|---|---|---|---|
| LncRNA | locus | value _PP |
value _NN |
linear fold change |
p_value | q_value | DE Genes around 1Mb |
| FPKM1_group_3643_transcript_2_1 | chr10:81078466-81078774 | 12.18 | 0.12 | 99.14 | 5.00E-05 | 1.19E-03 | ZMIZ1;EIF5AL1;PPIF |
| SPRR2C | chr1:153112593-153113969 | 114.94 | 3.96 | 28.99 | 5.00E-05 | 1.19E-03 | PGLYRP3;PGLYRP4;SPRR4;KPRP;SPRR2E;SPRR2D;SPRR2G;SPRR2F;SPRR2A;SPRR2B;SPRR1A;SPRR1B;S100A3;S100A2;C1orf68;LCE1F;LCE1D;LCE1E;LCE1B;LCE1C;LCE1A;LCE2C;LCE2B;LCE2A;LCE2D;S100A13;S100A12;S100A14;S100A16;IVL;S100A7A;PRR9;S100A4;LCE6A |
| ENSG00000253187.2/HOXA-AS4 | chr7:27202056-27219880 | 20.36 | 1.03 | 19.79 | 5.00E-05 | 1.19E-03 | HOXA5;HOXA9;HIBADH;HOXA10 |
| FPKM1_group_12840_transcript_2_1 | chr17:31207487-31208110 | 14.29 | 0.74 | 19.43 | 5.00E-05 | 1.19E-03 | PSMD11;CDK5R1 |
| FPKM1_group_1446_transcript_2_1 | chr1:145396583-145397363 | 8.22 | 0.44 | 18.58 | 5.00E-05 | 1.19E-03 | ANKRD35;HFE2;PDE4DIP;PDZK1;SEC22B |
| ENSG00000225886.1/RP11-288L9.4 | chr1:27995978-27996787 | 14.08 | 0.87 | 16.26 | 5.00E-05 | 1.19E-03 | CD164L2;MAP3K6;STX12;PTAFR;IFI6;EYA3;AHDC1 |
| CASP5 | chr11:104864966-104893895 | 13.06 | 0.94 | 13.89 | 5.00E-05 | 1.19E-03 | CASP4;CARD18;CARD16;CASP5;CASP1 |
| ENSG00000233101.6/HOXB-AS3 | chr17:46620912-46683776 | 4.48 | 0.32 | 13.86 | 5.00E-05 | 1.19E-03 | HOXB3;HOXB2;HOXB7;SNF8 |
| FPKM1_group_27969_transcript_1_1 | chr6:27198176-27198434 | 159.35 | 12.08 | 13.19 | 5.00E-05 | 1.19E-03 | HIST1H2AH;HIST1H2AG;HIST1H2BK;HIST1H2BJ |
| KRT16P2 | chr17:16733796-16736147 | 29.24 | 2.42 | 12.1 | 5.00E-05 | 1.19E-03 | CCDC144A;CENPV |
| HOXA10-HOXA9 | chr7:27202056-27219880 | 42.16 | 3.7 | 11.39 | 5.00E-05 | 1.19E-03 | HOXA5;HOXA9;HIBADH;HOXA10 |
| FPKM1_group_21620_transcript_1_1 | chr3:56726906-56727929 | 8.07 | 0.71 | 11.36 | 5.00E-05 | 1.19E-03 | IL17RD |
| FPKM1_group_5248_transcript_2_1 | chr11:93849929-93850252 | 62.82 | 5.56 | 11.3 | 5.00E-05 | 1.19E-03 | MED17;HEPHL1 |
| EPGN | chr4:75174186-75182520 | 152.09 | 13.68 | 11.11 | 5.00E-05 | 1.19E-03 | BTC;EPGN;EREG;CXCL1;CXCL3;CXCL2;CXCL5;CXCL6 |
| ENSG00000248243.1/RP11-93K22.13 | chr3:129808275-129813147 | 4.29 | 0.4 | 10.68 | 5.00E-05 | 1.19E-03 | COL6A6 |
| VNN3 | chr6:133043925-133055904 | 48.48 | 4.71 | 10.29 | 5.00E-05 | 1.19E-03 | SLC18B1;VNN3;VNN1;RPS12 |
| ENSG00000260673.1/RP4-529N6.2 | chr6:4599520-4602654 | 103.98 | 10.16 | 10.23 | 5.00E-05 | 1.19E-03 | RPP40;CDYL;ECI2 |
| FPKM1_group_29421_transcript_3_1 | chr6:161726548-161729593 | 2.71 | 0.28 | 9.77 | 5.00E-05 | 1.19E-03 | |
| ENSG00000258689.1/RP6-65G23.1 | chr14:71165414-71178870 | 5.61 | 0.6 | 9.38 | 5.00E-05 | 1.19E-03 | MED6;TTC9;MAP3K9 |
| ENKUR | chr10:25270907-25305085 | 11.28 | 1.22 | 9.28 | 5.00E-05 | 1.19E-03 | ENKUR |
| CYP4Z2P | chr1:47308766-47366147 | 10.67 | 1.2 | 8.89 | 5.00E-05 | 1.19E-03 | NSUN4;CYP4B1;PDZK1IP1;STIL;CYP4X1 |
| FPKM1_group_32292_transcript_1_1 | chr8:82201234-82201898 | 83.53 | 9.59 | 8.71 | 5.00E-05 | 1.19E-03 | PMP2;FABP5 |
| FPKM1_group_5248_transcript_1_1 | chr11:93849161-93849752 | 16.92 | 1.98 | 8.56 | 5.00E-05 | 1.19E-03 | MED17;HEPHL1 |
| ENSG00000228318.1/AP001610.5 | chr21:42813320-42814669 | 112.57 | 13.55 | 8.31 | 5.00E-05 | 1.19E-03 | TMPRSS2;FAM3B;MX2;C2CD2;PLAC4;MX1;RIPK4 |
| PSG7 | chr19:43428283-43441330 | 11.9 | 1.49 | 7.98 | 5.00E-05 | 1.19E-03 | CEACAM1;PSG4;PSG7;CD177 |
| CMPK2 | chr2:6988439-7006766 | 85.73 | 10.86 | 7.89 | 5.00E-05 | 1.19E-03 | RSAD2;CMPK2 |
| GBAP1 | chr1:155183615-155197325 | 10.94 | 1.47 | 7.44 | 5.00E-05 | 1.19E-03 | SLC50A1;MUC1;GBA;ASH1L;PMVK;HCN3;SHC1;KCNN3;PKLR;EFNA1;FDPS |
| ENSG00000176075.6/LINC00302 | chr1:152627952-152629280 | 84.73 | 12.36 | 6.86 | 5.00E-05 | 1.19E-03 | SPRR4;KPRP;SPRR2E;SPRR2D;SPRR2G;SPRR2F;SPRR2A;SPRR2B;SPRR1A;SPRR1B;RPTN;C1orf68;LCE1F;LCE1D;LCE1E;LCE1B;LCE1C;HRNR;LCE1A;LCE2C;LCE2B;LCE2A;LCE2D;IVL;LCE3D;LCE3E;LCE3A;LCE3C;CRCT1;CRNN;LCE6A |
| FPKM1_group_29417_transcript_5_1 | chr6:161707105-161709329 | 2.55 | 0.38 | 6.63 | 5.00E-05 | 1.19E-03 | |
| AZGP1P1 | chr7:99578384-99581860 | 46.17 | 7.15 | 6.46 | 5.00E-05 | 1.19E-03 | MCM7;CYP3A4 |
| b: Top 30 under expressed lncRNAs in PP skin | |||||||
|---|---|---|---|---|---|---|---|
| LncRNA | locus | value _PP |
value _NN |
Linear Fold Change |
p_value | q_value | DE Genes around 1Mb |
| FPKM1_group_28120_transcript_1_1 | chr6:39924108-39924571 | 0 | 5.56 | NA | 5.00E-05 | 1.19E-03 | MOCS1 |
| FPKM1_group_29557_transcript_1_1 | chr6:170470792-170471262 | 0 | 5.96 | NA | 5.00E-05 | 1.19E-03 | PSMB1;DLL1 |
| FPKM1_group_31749_transcript_1_1 | chr8:29452887-29454061 | 0 | 5.64 | NA | 5.00E-05 | 1.19E-03 | DUSP4 |
| LPO | chr17:56315786-56345879 | 0.01 | 4.83 | 716.29 | 5.00E-05 | 1.19E-03 | SUPT4H1;MRPS23 |
| ENSG00000253745.1/RP11-350F16.1 | chr8:47834182-47840454 | 0.17 | 72.96 | 418.38 | 5.00E-05 | 1.19E-03 | |
| ENSG00000272736.1/RP11-799N11.1 | chr17:10286448-10527203 | 0.06 | 11.04 | 195.07 | 5.00E-05 | 1.19E-03 | MYH3;MYH1 |
| ENSG00000259283.2/RP11-26L20.3 | chr16:55293880-55367500 | 0.29 | 53.7 | 183.56 | 5.00E-05 | 1.19E-03 | IRX6;SLC6A2;MMP2 |
| FPKM1_group_5050_transcript_1_1 | chr11:75445099-75445801 | 0.02 | 4.05 | 172.93 | 5.00E-05 | 1.19E-03 | DGAT2;MOGAT2;ARRB1;RPS3;MAP6;WNT11 |
| FPKM1_group_27961_transcript_1_1 | chr6:27029407-27029711 | 0.09 | 9.96 | 116.08 | 5.00E-05 | 1.19E-03 | HIST1H2AH;HIST1H2AG;HIST1H2BK;HIST1H2BJ |
| ENSG00000249365.1/RP11-508M8.1 | chr5:124443896-124485622 | 0.16 | 15.4 | 96.38 | 5.00E-05 | 1.19E-03 | ZNF608 |
| FPKM1_group_31738_transcript_1_1 | chr8:29162690-29163092 | 0.12 | 10.56 | 89.7 | 5.00E-05 | 1.19E-03 | DUSP4;HMBOX1 |
| ENSG00000224525.2/RP11-561I11.3 | chr1:242310815-242374129 | 0.08 | 6.55 | 84.81 | 5.00E-05 | 1.19E-03 | EXO1 |
| ENSG00000186526.8/CYP4F8 | chr19:15726028-15741448 | 2.05 | 156.94 | 76.67 | 5.00E-05 | 1.19E-03 | CYP4F2;CYP4F3;NOTCH3;CYP4F8;EPHX3 |
| FPKM1_group_31750_transcript_1_1 | chr8:29460151-29461688 | 0.17 | 12.57 | 71.85 | 5.00E-05 | 1.19E-03 | DUSP4 |
| SLC30A10 | chr1:220046618-220292777 | 0.11 | 7.82 | 71.83 | 5.00E-05 | 1.19E-03 | |
| FPKM1_group_18703_transcript_2_1 | chr2:223577752-223581956 | 0.2 | 14.06 | 68.74 | 5.00E-05 | 1.19E-03 | MOGAT1;PAX3;ACSL3;SGPP2 |
| ENSG00000266413.2/RP11-88L24.4 | chr2:179641652-179644690 | 0.63 | 43.33 | 68.33 | 5.00E-05 | 1.19E-03 | |
| ENSG00000250266.1/RP11-789C1.1 | chr4:171195069-171204230 | 1.24 | 70.12 | 56.44 | 5.00E-05 | 1.19E-03 | MFAP3L |
| ENSG00000223342.2/RP3-429O6.1 | chr6:6901254-6918948 | 0.32 | 17.24 | 53.04 | 5.00E-05 | 1.19E-03 | RREB1 |
| FPKM1_group_18703_transcript_1_1 | chr2:223575934-223577593 | 0.32 | 15.94 | 49.79 | 5.00E-05 | 1.19E-03 | MOGAT1;PAX3;ACSL3;SGPP2 |
| ENSG00000261788.1/RP11-480G7.1 | chr16:46737280-46737937 | 0.51 | 24.75 | 48.4 | 5.00E-05 | 1.19E-03 | MYLK3;DNAJA2;ORC6 |
| ENSG00000253844.1/RP11-546K22.1 | chr8:52874017-52935534 | 0.12 | 5.44 | 45.66 | 5.00E-05 | 1.19E-03 | PCMTD1 |
| MYPN | chr10:69865873-69971773 | 0.26 | 10.19 | 39.26 | 5.00E-05 | 1.19E-03 | DNA2;CTNNA3;DNAJC12;TET1;MYPN |
| ENSG00000223351.1/ZNF385D-AS2 | chr3:21984057-22021320 | 0.24 | 9.3 | 38.82 | 5.00E-05 | 1.19E-03 | ZNF385D |
| ENSG00000181123.4/RP4-539M6.14 | chr22:30879340-30888791 | 0.17 | 6.24 | 37.81 | 5.00E-05 | 1.19E-03 | SEC14L6;PES1;SEC14L4;SLC35E4;LIF |
| ENSG00000237560.1/AC004562.1 | chr17:67957847-67979679 | 0.16 | 6 | 36.46 | 5.00E-05 | 1.19E-03 | KCNJ2 |
| ENSG00000257514.1/RP11-755O11.2 | chr12:102040497-102053748 | 0.42 | 15.08 | 35.79 | 5.00E-05 | 1.19E-03 | NUP37;PARPBP;MYBPC1;SLC5A8;CHPT1 |
| FPKM1_group_14990_transcript_1_1 | chr19:33173072-33173778 | 0.43 | 15.14 | 34.84 | 5.00E-05 | 1.19E-03 | RHPN2;ANKRD27;RGS9BP;PDCD5 |
| ENSG00000236924.1/RP11-390F4.6 | chr9:6645955-6670635 | 0.2 | 6.25 | 31.52 | 5.00E-05 | 1.19E-03 | IL33;GLDC |
| ENSG00000243961.2/RP5-839B4.8 | chr20:9966735-9987764 | 0.51 | 15.82 | 31.17 | 5.00E-05 | 1.19E-03 | |