Table 2.
Statistically significantly enriched pairs of terms as identified in the analyzed set of documents (pairs with FDR < = 0.05), when one member of the pair is miRNA or lncRNA.
| Dictionary | # of statistically significantly enriched pairs of terms containing miRNAs | # of statistically significantly enriched pairs of terms containing lncRNAs |
|---|---|---|
| Chemicals/Compounds | ||
| Antibiotics | 32 | 10 |
| Chemical Entities of Biological Interest (ChEBI) | 728 | 152 |
| Drugs (DrugBank + Chembl) | 357 | 56 |
| Enzymes (IntEnz) | 267 | 60 |
| Metabolites (MetaboLights) | 234 | 51 |
| Toxins (T3DB) | 236 | 57 |
| Functional Annotation | ||
| Biological Process (GO) | 913 | 102 |
| Cellular Component (GO) | 111 | 84 |
| Disease Ontology (DO) | 1,412 | 274 |
| Molecular Function (GO) | 112 | 43 |
| Pathways (KEGG, Reactome, UniPathway, PANTHER) | 518 | 71 |
| General | ||
| Drug Indications and Side Effects (SIDER) | 1,048 | 202 |
| Human Anatomy | 1,099 | 241 |
| Genes/Proteins/Transcripts | ||
| Human Genes & Proteins (EntrezGene) | 7,303 | 3,055 |
| Human Long Non-Coding RNAs (FARNA) | 70 | 364 |
| Human MicroRNAs (miRBase) | 19,724 | 70 |
| Human Transcription Co-Factors (TcoF-DB) | 268 | 56 |
| Human Transcription Factors (TcoF-DB) | 1,123 | 345 |
| Mutations (tmVar) | 192,936 | 7,447 |
| Total | 36,222 | 5373 |
| Searchable records (includes redundant inverse pairs for the same dictionary associations, i.e., for miRNA-miRNA and lncRNA-lncRNA associations) | 36,222+19,724 = 55,966 | 5,373 + 364 = 5,737 |