Table 1.
Top differentially expressed genes responding to near-neutral pH stress in susceptible and tolerant blueberries
| gene_id | logFC | logCPM | P value | FDR | uniprot_id | Evalue | Description |
|---|---|---|---|---|---|---|---|
| A. Vaccinium corymbosum | |||||||
| CUFF.22809 | −5.07 | 4.814549 | 1.80E-11 | 6.63E-07 | A0A118JUM8_CYNCS | 8.00E-96 | Cupin 1 |
| CUFF.4259 | −4.52 | 5.452318 | 1.37E-10 | 2.52E-06 | A0A103XEL9_CYNCS | 1.00E-28 | Cupredoxin |
| CUFF.236 | −4.30 | 4.41962 | 6.74E-10 | 5.61E-06 | A0A061DQL9_THECC | 4.00E-37 | Ralf-like 33, putative |
| CUFF.28304 | −3.62 | 2.988055 | 9.58E-10 | 5.61E-06 | A0A0B4VRZ0_SALMI | 0 | Cytochrome P450 CYP86A91 |
| CUFF.40209 | −3.79 | 4.908315 | 9.60E-10 | 5.61E-06 | B9TAC6_RICCO | 0 | Receptor protein kinase CLAVATA1, putative |
| CUFF.54833 | −3.94 | 1.964193 | 1.22E-09 | 5.61E-06 | B9I5Q8_POPTR | 0 | Clavata1 receptor kinase family protein |
| CUFF.8465 | −3.9 | 4.05831 | 4.77E-10 | 5.61E-06 | I7AUB2_9ROSI | 0 | Hydroxycinnamoyl coa shikimate/quinate hydroxycinnamoyl transferase (HCT) |
| CUFF.1958 | −6.02 | 6.395831 | 1.85E-09 | 7.60E-06 | A0A061GZH4_THECC | 3.00E-146 | Late embryogenesis abundant (LEA) protein-related |
| CUFF.38453 | −3.16 | 3.680711 | 2.07E-09 | 7.64E-06 | B9HEC0_POPTR | 8.00E-12 | Uncharacterized protein |
| CUFF.14284 | −5.34 | 3.369 | 2.61E-09 | 8.76E-06 | D7UCW0_VITVI | 0 | Laccase |
| B. Vaccinium arboreum | |||||||
| CUFF.1549 | 2.29 | 3.15 | 1.31E-07 | 1.73E-03 | A0A151STL0_CAJCA | 3.00E-36 | F-box/kelch-repeat protein At3g06240 family |
| CUFF.13406 | −4.13 | 5.11 | 3.82E-07 | 2.35E-03 | A0A103YHW1_CYNCS | 1.00E-19 | Stigma-specific protein Stig1 |
| CUFF.34224 | 4.07 | 3.56 | 4.32E-07 | 2.35E-03 | B9GWH1_POPTR | 5.00E-41 | Putative copper-transporting atpase 3 family protein |
| CUFF.4259 | −2.50 | 5.45 | 4.47E-07 | 2.35E-03 | A0A103XEL9_CYNCS | 1.00E-28 | Cupredoxin |
| CUFF.13402 | −4.08 | 3.97 | 9.70E-07 | 2.68E-03 | A0A103YHW1_CYNCS | 7.00E-23 | Stigma-specific protein Stig1 |
| CUFF.17694 | −2.90 | 4.42 | 9.18E-07 | 2.68E-03 | A0A067JKU4_JATCU | 4.00E-59 | Laccase |
| CUFF.32389 | 2.51 | 3.31 | 6.37E-07 | 2.68E-03 | A0A075EB50_9ERIC | 0 | EIN3-like protein EIL3 |
| CUFF.57421 | −2.37 | 2.43 | 1.02E-06 | 2.68E-03 | I2BH27_LINUS | 3.00E-39 | Glycosyltransferase |
| CUFF.59288 | 2.21 | 5.45 | 8.89E-07 | 2.68E-03 | E9LK45_VITVI | 1.00E-50 | Copper transporter |
| CUFF.61186 | 2.84 | 7.90 | 1.07E-06 | 2.68E-03 | U5GPN1_POPTR | 0.007 | Uncharacterized protein |
| C. Contrasting response | |||||||
| CUFF.2654 | −6.55 | 5.56 | 4.63E-09 | 1.71E-04 | A0A0B2Q009_GLYSO | 3.00E-106 | Prostaglandin G/H synthase 2 |
| CUFF.24077 | 3.37 | 5.06 | 4.41E-08 | 8.13E-04 | B9RDF5_RICCO | 3.00E-155 | Alcohol dehydrogenase, putative |
| CUFF.236 | −4.02 | 4.42 | 1.08E-07 | 1.32E-03 | A0A061DQL9_THECC | 4.00E-37 | Ralf-like 33, putative |
| CUFF.12615 | −2.99 | 5.26 | 1.76E-07 | 1.35E-03 | A0A061EMA1_THECC | 8.00E-170 | Leucine-rich repeat (LRR) family protein |
| CUFF.22809 | −4.41 | 4.81 | 1.82E-07 | 1.35E-03 | A0A118JUM8_CYNCS | 8.00E-96 | Cupin 1 |
| CUFF.32460 | −2.27 | 3.90 | 4.57E-07 | 1.57E-03 | A0A022Q8S6_ERYGU | 7.00E-39 | 40S ribosomal protein S21 |
| CUFF.59789 | −3.55 | 2.69 | 3.98E-07 | 1.57E-03 | A0A061GSM4_THECC | 8.00E-16 | Uncharacterized protein |
| 22424_g | −5.27 | 3.94 | 5.84E-07 | 1.80E-03 | B9RTU6_RICCO | 5.00E-12 | Basic 7S globulin 2 small subunit |
| CUFF.59379 | −4.42 | 4.00 | 6.57E-07 | 1.86E-03 | A0A061GZR4_THECC | 3.00E-121 | Cytochrome P450 94A1 |
| CUFF.10843 | 2.36 | 3.41 | 7.51E-07 | 1.91E-03 | I6U574_9ROSA | 8.00E-37 | Dehydration-responsive element binding protein |