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. 2017 Jul 17;114(31):8336–8341. doi: 10.1073/pnas.1707896114

Table S2.

Primers for cloning, 5′ and 3′ RACE of candidate genes, construction of overexpression plasmids, and qRT-PCR

Target gene and name Sequence (5′ → 3′)
Cloning
 Bm8846
  8846-F3 ATGCTACGAACGCCACTACGC
  8846-F5 CCGGGTCAAACTTTGGACTT
  8846-F6 GCTGGACACAAGGATTCGTC
  8846-R3 TTATGTATCTTTGTTTGCATCCTTGGC
  8846-R4 GCTTCCAATCAACATCATCG
  8846-R5 ACATTTATGTATCTTTGTTTGCATCC
  8846-R6 TGGACTGCAGTGTGCAGCTCCA
 Bmspz-3
  9035-F3 TGGTGTTAGCACGAGCGGACAG
  9035-F4 CGATGAGAAACTCAGTGGGCTGTG
  9035-F5 AGAGTGTATGTGGCATCGGTGCGA
  9035-F6 GCATGTCATGTCTTGCCGCCATAAC
  9035-R9 GTCGAAGCCGGACTGAAGCCTT
  9035–5RACE-F2 AGTCAGTAGTGGTCGCGCGCGA
  9036-F4 ATAGAACACTGCCATTGTATTGTTACG
  9036-R10 CCGTCAAGGGAATGAAAATTACAAATC
  9036-R3 CCGGTCGTGGTTTTGCTGCAAGTT
  9036-R4 GCTTTGATTTGCGGAGAGTGAAGTGA
  9036-R5 AGTTTCCAGCCGTTGGGCAATACAA
 Bmago-3
  9037-F3 ATGATGGACTCTCCCTCACAATCT
  9037-F4 CGCACACGTCGTTTGAGCGAA
  9037-F5 AGATTTCATGATATGCCTCATTCCGG
  9037-R3 CTGTTACGTATCCAGGCCAAACTT
  9037-R4 TAGACGACTCTTGGCAGTTTCGTT
  9037-R5 GTATGCTGATGCTCCAAAGCGT
  9037-R6 GCACGCACTGTCCCACTAGAT
5′ and 3′ RACE
 Bm8846
  8846–3RACE-F1 GCCAGCGGACTGCCTGTGGTAACAGATGC
  8846–3RACE-nest-F1 ATCGTGCTCTTCTTGTCCAAGCT
  8846–5RACE-nest-R1 GCGTAGTGGCGTTCGTAGCAT
  8846–5RACE-R1 GGCAAGTGGACTGCAGTGTGCAGCTCCA
 Bmspz-3
  9035–5RACE-nest-R1 ACTTTCCGCTCGTGACGTCC
  9035–5RACE-R1 GAGTGGCGTGGGATCGTCTACACCGAACGGG
  9036–3RACE-F1 TTCGACGCCGCCCGGCAGCCGAGTGAAG
  9036–3RACE-F2 GCCTGACGCGCAGGCCGTCAACAGTACCG
  9036–3RACE-F3 CTCGTTTACAGACGTGACCACA
  9036–3RACE-nest-F1 GGTGGATGCGTGCGAAAGCAA
  9036–3RACE-nest-F2 CCCTCAACTCCGCAAGGAAACT
  9036–3RACE-nest-F3 ATCAGTACCAAAACTTGTTGGAGGC
 Bmago-3
  9037–3RACE-F3 CCGAATCCCGGGACCGTGGTCGATCACTGT
  9037–3RACE-F4 ACACTAGGATCTTCCTGAAGTCGA
  9037–3RACE-nest-F3 AACGAGACGGGACTGGTACGAT
  9037–5RACE-nest-R3 CCTATACTCACTCCTGAAGTACTA
  9037–5RACE-nest-R4 TACTAGGAGTTGCACTTGCAATGGT
  9037–5RACE-R3 GCCAGCATCAATGCTGCTGCGCGTCCTCT
Plasmid construction
 Spz3ZeFL, Spz3WTFL
  infu-spz3-F1 CCACCGGTCGCCACCatggctttggtaaattttacgctcgc
  infu-spz3-R2 AGAGTCGCGGCCGCTTCAAGGCTTACACCTGCAAACGCA
 Spz3ZeCKfib, Spz3WTCKfib
  infu2-spz3-F actaattcaaggatccaccggtcgccaccATGGCTTTGGTAAATTTTACGCTCGC
  FibHSigP-R1 tgcatttgtataagcgacatactgcagagcgcagcacaagat
  Spz_CysKnot_F GCTTATACAAATGCAcaggcctckaacacacaaytg
  spz3CK-NotI-R1 AGAGTCGCGGCCGCT
 Spz3Ze(1–60), Spz3WT(1–60)
  BamHI-spz3(1-60)-F1 ACTAATTCAAGGATCatggctttggtaaattttac
  Bm_spz3_60aa_R(4mRFP) GTCCTCGGTGTTGTCttgattcgaagggggactgaa
  opt-mRFP-F gacaacaccgaggacgtcatcaagga
  15bp-opt-mRFP-R TCTAGAGTCGCGGCCGCctactgggagccggagtggcggg
qRT-PCR
 BmrpL3
  rPL3_qPCR_03-F ATCAAGGGTTGCTGCATGGGACCT
  rPL3_qPCR_03-R GGTTGATCTTTTCTAGTGCAGCCCTC
 Bm8846
  8846_qPCR02-F TGGTAACAGATGCTAAACCTTCGGGT
  8846_qPCR02-R TGTACAGTAGGACGAATCCTTGTGTC
 Bmspz-3
  spz3qPCR01-F CAAAACACAGCTCCACGCGGTAC
  spz3qPCR01-R CCGTTTCGTAGAAGTATCGGACCTTG
 Bmago-3
  9037_qPCR02-F GGGTTCTGTTGTTCACTCAGAGGGA
  9037_qPCR02-R GAGGGGTACCAATTCAGCGTCAGA
 BmToll-8
  BmToll8_qPCR01-F CAAGCATTGTCGGTTCTTTCTG
  BmToll8_qPCR01-R TTTCGGAGTGCTTGTGGATTT
 BmTH
  BmTH_qPCR02-F CGCCTTTCCACACACCTGAACC
  BmTH_qPCR02-R GGGATGCAAGGCCAATTTCTTGCG
 BmDDC
  BmDDC_qPCR02-F GATGAAGACATCCGCAACGGTCTCA
  BmDDC_qPCR02-R ATCTCCAATTTCGTCAAGAGCGTCG
 Bmlac-2
  lac-2_qPCR01-F CGAACCACCAAGGATCTGTTACTATC
  lac-2_qPCR01-R GGCAATGAGACCAGACCACATTCGT
 Bmyellow
  Bmyellow_qPCR01-F GTCAGCGTTCCTAGGTGGCG
  Bmyellow_qPCR01-R TCGAAGCTCGGGTAGGGCGTT