Table 2. The contribution of repeat recombination, estimated by the model from the data sets in different regions.

Data set	Flanking, %	Permuted, %	Inside, %	Outside, %
Alu(hg15)	12.1 ± 1.4	0.5 ± 2.3	91.8 ± 2.2	3.8 ± 0.8
Alu(hg16)	12.9 ± 1.0	0.2 ± 1.3	92.5 ± 1.3	3.7 ± 0.7
L1(hg15)	3.1 ± 1.0	0.4 ± 1.5	92.1 ± 1.8	2.7 ± 1.0
L1(hg16)	6.9 ± 1.1	0.8 ± 2.0	92.7 ± 1.4	2.7 ± 1.0

Shown are data from the original data set from the duplication flanking regions, the permuted data set from the flanking regions, the data set from the regions inside the duplication, and the data set from the regions outside the duplication, far away (>3,000 bp) from the breakpoint. All the data are shown as mean ± SD (for more detailed results, see Supporting Appendix).