Table 3.
Comparison of performance metrics on 5-viral mix HIV-1 dataset.
| Algorithm | Recall | Precision | FP/TP ratio | # of unique 35-mers |
|---|---|---|---|---|
| Uncorrected | 98.01 | 0.2 | 439 | 11.4 M |
| BLESS | 97.31 | 0.4 | 227 | 5.89 M |
| Musket | 97.91 | 0.3 | 366 | 11.2 M |
| BFC | 97.55 | 0.3 | 316 | 9.6 M |
| BayesHammer | 97.49 | 0.8 | 122 | 6.3M |
| Seecer | 97.84 | 0.5 | 220 | 11.3M |
| MultiRes | 96.64 | 7.1 | 13 | 359 K |
The recall, precision, and FP/TP ratios of each method are evaluated on the 5-viral mix HIV-1 dataset. The number of unique 35-mers indicates the number of unique 35-mers predicted by a method. There are 53 thousand true unique 35-mers in the consensus sequences of the 5 viral strains. Bold indicates the best method for the measure in each column.