Table 3.
In-silico analysis of the missense mutations identified in this study
Family ID | DNA variant; Chromosomal position | Protein change | Grantham | PhyloP | SIFT | PolyPhen-2 | CADD score | ExAC Minor allele frequency | Ref. |
---|---|---|---|---|---|---|---|---|---|
W13-1504 | c.2086T>C; Chr1-197391044T>C | p.Cys696Arg | 180 | 4.73 | Del | PD | 24 | Absent | This study |
W13-1504 | c.2234C>T; Chr1-197396689C>T | p.Thr745Met | 81 | 4.16 | Del | PD | 23.6 | T=0.000083 | [22] |
W13-1493 | c.3090T>A; Chr1-197404083T>A | p.Asn1030Lys | 94 | -0.36 | Del | PD | 18.17 | Absent | This study |
SIFT, sorting intolerant from tolerant; PolyPhen-2, polymorphism phenotyping; CADD, combined annotation dependent depletion; ExAC, Exome Aggregation Consortium; Del, deleterious; PD, probably damaging