Table 3.
The 25 most highly expressed genes in Mytilisepta virgata digestive gland and representative significantly over-represented annotations by gene set enrichment analysis
| Most expressed genes | Over-represented annotations | |||
|---|---|---|---|---|
| Annotation | TPM | Term | Class | p-value |
| Vdg3 | 43,813.51 | Extracellular space | CC | 0.00 |
| Probable apolipoprotein | 14,067.11 | ShK domain-like | PFAM | 0.00 |
| Probable apolipoprotein | 12,230.17 | Ependymin | PFAM | 0.00 |
| Alpha tubulin | 11,375.80 | Lectin C-type domain | PFAM | 1.11E-16 |
| Elongation factor 1 alpha | 11,074.06 | C1q domain | PFAM | 2.22E-16 |
| Ependymin-related protein | 11,054.83 | von Willebrand factor type C domain | PFAM | 1.07E-14 |
| Ependymin-related protein | 8275.80 | Cellulose catabolic process | BP | 3.83E-12 |
| Vdg3 | 8084.66 | Lysosome | CC | 7.27E-12 |
| Chitotriosidase | 7926.27 | Cellulase activity | MF | 4.21E-11 |
| Unknown | 6439.28 | Glycosyl hydrolase family 9 | PFAM | 8.40E-11 |
| Probable apolipoprotein | 6230.41 | alpha/beta hydrolase fold | PFAM | 2.00E-10 |
| Cytoplasmic actin | 6103.04 | Carboxylesterase family | PFAM | 3.77E-10 |
| Calcium binding protein | 5887.19 | Trypsin | PFAM | 6.07E-10 |
| Meprin A | 5695.11 | Glycosyl hydrolases family 16 | PFAM | 8.76E-9 |
| 60S ribosomal protein P0 | 5364.73 | Serine-type endopeptidase activity | MF | 1.34E-8 |
| Ependymin-related protein | 5342.49 | MAM domain, meprin/A5/mu | PFAM | 2.76E-8 |
| Urokinase-like protein | 5283.92 | Carbohydrate metabolic process | BP | 5.91E-8 |
| Ganglioside GM2 activator | 5163.45 | Lipid transporter activity | MF | 8.20E-8 |
| Putative metalloprotease | 4892.49 | Antistasin family | PFAM | 1.36E-7 |
| Alpha tubulin | 4698.32 | Sulfatase | PFAM | 1.17E-6 |
| Spondin-like protein | 4503.80 | Glycosyl hydrolase family 10 | PFAM | 5.83E-6 |
| 40S ribosomal protein SA | 4288.17 | Peptide metabolic process | BP | 4.26E-6 |
| C1q domain-containing protein | 4279.26 | Lipase | PFAM | 8.19E-6 |
| Ependymin-related protein | 3725.69 | Prolyl oligopeptidase family | PFAM | 8.39E-5 |
| Calcium binding protein | 3528.24 | Xenobiotic metabolic process | BP | 4.56E-4 |
See the complete list in Additional file 4
TPM Transcript Per Million, PFAM Pfam conserved domains, BP Gene Ontology Biological Process, MF Gene Ontology Molecular Function, CC Gene Ontology Cellular Component