Table 2.
Distribution of small RNAs among different categories in different development stage of PTGMS line BS366 under different condition.
| Category | SS1 | SS2 | SS3 | FS1 | FS2 | FS3 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Unique sRNAs (%) | Total sRNAs (%) | Unique sRNAs (%) | Total sRNAs (%) | Unique sRNAs (%) | Total sRNAs (%) | Unique sRNAs (%) | Total sRNAs (%) | Unique sRNAs (%) | Total sRNAs (%) | Unique sRNAs (%) | Total sRNAs (%) | |||||||||||||
| Total | 4,234,853 | 100.00 | 10,229,410 | 100.00 | 4,286,995 | 100.00 | 11,137,867 | 100.00 | 4,468,812 | 100.00 | 10,052,706 | 100.00 | 4,671,289 | 100.00 | 11,588,469 | 100.00 | 4,037,358 | 100.00 | 9,636,332 | 100.00 | 5,057,900 | 100.00 | 10,579,675 | 100.00 |
| Match_genome | 3,855,146 | 91.03 | 9,407,748 | 91.97 | 3,917,068 | 91.37 | 10,334,127 | 92.78 | 4,082,040 | 91.35 | 9,268,237 | 92.20 | 4,271,167 | 91.43 | 10,690,868 | 92.25 | 3,688,383 | 91.36 | 8,901,224 | 92.37 | 1,271,126 | 25.13 | 4,019,074 | 37.99 |
| Exon_antisense | 17,536 | 0.41 | 41,963 | 0.41 | 18,464 | 0.43 | 47,312 | 0.42 | 19,928 | 0.45 | 49,006 | 0.49 | 19,342 | 0.41 | 49,467 | 0.43 | 17,464 | 0.43 | 40,902 | 0.42 | 11,696 | 0.23 | 24,146 | 0.23 |
| Exon_sense | 48,708 | 1.15 | 80,220 | 0.78 | 64,153 | 1.50 | 101,089 | 0.91 | 39,463 | 0.88 | 81,722 | 0.81 | 53,670 | 1.15 | 94,512 | 0.82 | 43,623 | 1.08 | 75,077 | 0.78 | 16,393 | 0.32 | 35,014 | 0.33 |
| Intron_antisense | 24,359 | 0.58 | 46,505 | 0.45 | 25,129 | 0.59 | 49,305 | 0.44 | 26,028 | 0.58 | 47,436 | 0.47 | 27,572 | 0.59 | 54,170 | 0.47 | 23,179 | 0.57 | 42,676 | 0.44 | 20,356 | 0.40 | 45,249 | 0.43 |
| Intron_sense | 900,590 | 21.27 | 2,062,146 | 20.16 | 912,889 | 21.29 | 2,231,617 | 20.04 | 956,376 | 21.40 | 2,046,554 | 20.36 | 996,022 | 21.32 | 2,340,279 | 20.19 | 859,361 | 21.29 | 1,921,980 | 19.95 | 307,660 | 6.08 | 946,856 | 8.95 |
| miRNA | 2,378 | 0.06 | 493,139 | 4.82 | 2,627 | 0.06 | 563,412 | 5.06 | 2,723 | 0.06 | 579,600 | 5.77 | 2,770 | 0.06 | 604,988 | 5.22 | 2,461 | 0.06 | 597,705 | 6.20 | 713 | 0.01 | 421,921 | 3.99 |
| rRNA | 37,932 | 0.90 | 521,297 | 5.10 | 47,310 | 1.10 | 815,699 | 7.32 | 31,402 | 0.70 | 341,584 | 3.40 | 41,964 | 0.90 | 652,531 | 5.63 | 34,836 | 0.86 | 507,004 | 5.26 | 43,217 | 0.85 | 672,965 | 6.36 |
| snRNA | 817 | 0.02 | 4,045 | 0.04 | 958 | 0.02 | 4,072 | 0.04 | 746 | 0.02 | 3,006 | 0.03 | 917 | 0.02 | 5,047 | 0.04 | 770 | 0.02 | 3,529 | 0.04 | 198 | 0.00 | 574 | 0.01 |
| snoRNA | 341 | 0.01 | 766 | 0.01 | 361 | 0.01 | 868 | 0.01 | 200 | 0.00 | 362 | 0.00 | 314 | 0.01 | 751 | 0.01 | 247 | 0.01 | 605 | 0.01 | 120 | 0.00 | 577 | 0.01 |
| tRNA | 1,654 | 0.04 | 15,613 | 0.15 | 2,037 | 0.05 | 18,149 | 0.16 | 1,375 | 0.03 | 9,832 | 0.10 | 1,803 | 0.04 | 16,646 | 0.14 | 1,511 | 0.04 | 12,410 | 0.13 | 1,809 | 0.04 | 17,441 | 0.16 |
| Unannotion | 3,200,538 | 75.58 | 6,963,716 | 68.08 | 3,213,067 | 74.95 | 7,306,344 | 65.60 | 3,390,571 | 75.87 | 6,893,604 | 68.57 | 3,526,915 | 75.50 | 7,770,078 | 67.05 | 3,053,906 | 75.64 | 6,434,444 | 66.77 | 4,655,738 | 92.05 | 8,414,932 | 79.54 |