Table I.
Characterization of 12 primer pairs for amplifying polymorphic microsatellite loci in crested macaques with PCR conditions, deviation from Hardy–Weinberg equilibrium, and estimated null allele frequency
Locus | Repeat pattern | Length of PCR product Dublin Zoo (bp) | Length of PCR product Tangkoko (bp) |
Annealing temperature (°C) | Hardy–Weinberg deviation | Estimated null allele frequency | Primer sequence (5′–3′) (including modified primers) | Reference |
---|---|---|---|---|---|---|---|---|
D1S548 | Tetra | 181–201 | 185–209 | 58 | n.s. | −0.0394 | F: GAACTCATTGGCAAAAGGAA R: GCCTCTTTGTTGCAGTGATT |
Lathuillière et al. 2001 |
D3S1768 | Tetra | 129–137 | 129–157 | 58 | n.s. | −0.046 | F: GGTTGCTGCCAAAGATTAGA R: AACTACATGATTCTAGCACA |
Lathuillière et al. 2001 |
D5S1457 | Tetra | 123, 127, 131 | 123–139 | 60 | n.s. | −0.0609 | F: TAGGTTCTGGGCATGTCTG R: TTGCTTGGCACACTTCAGG |
Bayes et al. 2000 |
D6S493* | Tetra | 261–269b | 139–159c | 58 | n.s. | −0.0374 | F: GCAACAGTTTATGCTAAAGC R: TTCCATGGCAGAAATTGTTT |
Nürnberg et al. 1998 |
D6S501* | Tetra | 163–179b | 129–145c | 58 | n.s. | −0.0345 | F: GCTGGAAACTGATAAGGGCT R: CTTTATCTTTAATATAGGATTATTGG |
Lathuillière et al. 2001 |
D7S2204 | Tetra | 171–247 | 220–268 | 58 | n.s. | −0.0579 | F: TCATGACAAAACAGAAATTAAGTG R: AGTAAATGGAATTGCTTGTTACC |
Lathuillière et al. 2001 |
D10S1432 | Tetra | 137–145 | 132–148 | 58 | n.s. | −0.0773 | F: CAGTGGACACTAAACACAATCC R: TAGATTATCTAAATGGTGGATTTCC |
Lathuillière et al. 2001 |
D11S925 | Di | 205–221 | 179–237 | 60 | n.s. | −0.0379 | F: GAACCAAGGTCGTAAGTCC R: TAGACCATTATGGGGGCAAA |
Lathuillière et al. 2001 |
D12S67a | Tetra | 135,177–193b | 159–185c | 58 | n.s. | −0.0262 | F: GCAACAGTTTATGCTAAAGC R: TGTTGTTCAAGGGTCAAATG |
Nürnberg et al. 1998 |
D13S765a | Tetra | 220, 224, 232b | 137–165c | 58 | n.s. | −0.0512 | F: TGTAACTTACTTCAAATGGCTCA R: ATTTACCTAACATTTCACCCATC |
Zhang et al. 2001 |
D14S255a | Di | 173–185b | 91–113c | 60 | n.s. | −0.0142 | F: AGCTTCCAATACCTCACCAA R: CTCTTAGTGGTCATTCTCAC |
Nürnberg et al. 1998 |
D18S536 | Tetra | 144–152 | 144–164 | 58 | n.s. | −0.0491 | F: ATTATCACTGGTGTTAGTCCT R: CACAGTTGTGTGAGCCAGT |
Kümmerli and Martin 2005 |
F indicates forward primers and R indicates reverse primers. n.s. = no significant deviation.
aPrimers of this marker were modified to be specific to crested macaques.
bBefore primer modification.
cAfter primer modification.