Table 1.
Species, ploidy levels, clean reads, uniquely mapped reads, uniquely mapped reads in genic regions and estimated depth per allele of the 14 accessions
| Clone name | Species | Ploidy level | Reads in million | Estimated number of reads per allele dose | ||
|---|---|---|---|---|---|---|
| Clean reads | Uniquely mapped reads (% of clean reads) | Uniquely mapped reads in genic regions (% of uniquely mapped) | ||||
| IND81–14 | S. spontaneous | 6x | 4.5 | 1.4 (33.1) | 1.2 (85.7) | 7.0 |
| US57–060 | E. rufipilu | 6x | 3.9 | 1.3 (33.3) | 1.0 (76.9) | 5.8 |
| US61–037 | Unknown | 6x | 3.6 | 1.2 (33.3) | 1.0 (83.3) | 5.8 |
| Kalimpon | E. procerum | 6x | 4.0 | 1.2 (30.0) | 1.0 (83.3) | 5.8 |
| SES196 | S. spontaneum | 8x | 4.0 | 1.3 (32.5) | 1.1 (84.6) | 4.8 |
| TekchaOk | S. sinense | 8x | 4.1 | 1.3 (31.7) | 1.1 (84.6) | 4.8 |
| NG57–054 | S. robustum | 8x | 6.2 | 2.1 (33.9) | 1.8 (85.7) | 7.9 |
| P-MAG-84 | S. officinarum | 8x | 4.2 | 1.4 (33.3) | 1.2 (85.7) | 5.3 |
| Pathri | S. barberi | 8x | 6.0 | 1.9 (31.7) | 1.6 (84.2) | 7.0 |
| NG96–024 | S. officinarum | 8x | 4.2 | 1.4 (33.3) | 1.2 (85.7) | 5.3 |
| Q050 | Saccharum hybrid | 12x | 4.3 | 1.4 (35.8) | 1.0 (83.3) | 2.9 |
| R570 | Saccharum hybrid | 12x | 5.0 | 1.6 (32.0) | 1.4 (87.5) | 4.1 |
| CP95–1039 | Saccharum hybrid | 12x | 11.3 | 3.7 (32.7) | 3.2 (86.4) | 9.3 |
| CP88–1762 | Saccharum hybrid | 12x | 13.0 | 4.3 (33.1) | 3.7 (86.0) | 10.8 |
| Average | 5.6 | 1.8 (32.4) | 1.5 (83.3) | 6.2 | ||