Table 1. . Variable-number tandem repeats in Mycoplasma pneumoniae.
Repeat name | Location on genome† | Repeat unit (consensus) | Repeat unit size (bp) | Copy number variation‡ | Affected gene ID and its function | HGDI§ |
---|---|---|---|---|---|---|
Mpn003 |
2849–2878 |
ATTAAATGGAAGACA |
15 |
1–2 |
MPN003, gyrB |
0.5098 |
Mpn1¶ |
111920–111991 |
CCGAGCTAAGCG |
12 |
2–6 |
MPN089, hsdS |
0.7890 |
Mpn103 |
134124–134131 |
TTTA |
4 |
2–3 |
MPN103, unknown |
0.5098 |
Mpn108a |
141296–141317 |
AG |
2 |
6–11 |
MPN108, 3′-UTR |
0.8207 |
Mpn108b |
141349–141362 |
AC/AG |
2 |
7–20 |
MPN108, 3′-UTR |
0.6963 |
Mpn111 |
146255–146274 |
AC/AG |
2 |
10–17 |
MPN111, YtxK |
0.5598 |
P1-AGT# |
182793–182813 |
AGT |
3 |
5–16 |
MPN141, P1 adhesin |
0.8268 |
Mpn444 |
538724–53835 |
TAC |
3 |
3–6 |
MPN444, lipoprotein |
0.5988 |
Mpn13¶ |
596741–596804 |
TATTAATAACTATTCT |
16 |
3–4 |
MPN490, 3′-UTR |
0.5098 |
Mpn14¶ |
608651–608755 |
TGGACAAAATGGAAGTAAAAA |
21 |
5–6 |
MPN501, unknown |
0.4024 |
Mpn15¶ |
645561–645707 |
TTGTCCATTCTTTCTTCCATC |
21 |
6–7 |
MPN524, unknown |
0.5098 |
Mpn16¶ |
736123–736216 |
ATTTTTTAAAAGTTTTTATTTATCCGTTTTGACAACTGCTTTTTGTT |
47 |
1–2 |
MPN613, unknown |
0 |
Mpn651 | 775850–775852 | AAT | 3 | 1–2 | MPN651, 5′-UTR | 0.5098 |
†Position on the M. pneumoniae M129 genome sequence (GenBank accession code U00089).
‡Based on comparison of 20 complete genome sequences except for Mpn16, which is based on the previous report [15].
§Based on typing of 41 isolates and excluding minor variants in heterogeneous loci (Supplementary Table 10).
¶Reported by Degrange et al. [15].
gyrB: DNA gyrase subunit B; hsdS: Type 1 restriction enzyme S subunit; UTR: Untranslated region;YtxK: Adenine-specific methyltransferase.