Table 1. Aedes aegypti populations included in this study.
| Population/ Collection site | Year Collected | Region [Fig 1 letter] | N | Analyses | Population Abbreviation |
|---|---|---|---|---|---|
| San Mateo, CA | 2013 | Northern California [A] | 22 | SNP, ABC | SM and SM2 |
| San Mateo, CA | 2014 | Northern California [A] | 7 | SM14 | |
| Madera, CA (1) | 2013 | Northern California [B] | 50 | SNP, ABC | CMad |
| Madera, CA (2) | 2013 | Northern California [B] | 27 | Mad1 | |
| Madera, CA | 2015 | Northern California [B] | 40 | SNP | MAD15 |
| Fresno, CA | 2015 | Northern California [C] | 34 | ABC | Fres |
| Exeter, CA | 2014 | Northern California [D] | 23 | SNP | Exe |
| Clovis, CA (1) | 2013 | Northern California [E] | 60 | SNP | Clovis |
| Clovis, CA (2) | 2013 | Northern California [E] | 35 | Cal | |
| Anaheim, CA (1) | 2015 | Southern California [F] | 15 | ABC | Ana_LC |
| Anaheim, CA (2) | 2015 | Southern California [F] | 16 | ABC | Ana |
| Orange, CA | 2015 | Southern California [G] | 13 | ABC | Or |
| Garden Grove, CA | 2015 | Southern California [H] | 29 | SNP, ABC | GG |
| Santa Ana, CA | 2015 | Southern California [I] | 30 | ABC | SA |
| Mission Viejo, CA | 2015 | Southern California [J] | 51 | SNP, ABC | MV |
| San Diego, CA (1) | 2015 | Southern California [K] | 28 | SNP, ABC | Cw |
| San Diego, CA (2) | 2015 | Southern California [K] | 30 | SNP, ABC | SY |
| Los Angeles, CA | 2014 | Southern California [L] | 6 | SNP | GLA |
| Maricopa County, AZ | 2013 | Southwest | 53 | Az | |
| Tucson, AZ | 2012 | Southwest | 54 | ABC | TJC2 |
| Las Cruces, NM | 2015 | Southwest | 54 | ABC | Cruc |
| Nogales, SON, MEX | 2013 | Southwest | 51 | ABC | Nog |
| Tijuana, BC, MEX | 2013 | Southwest | 20 | Tj | |
| Houston, TX | 2011 | South Central | 19 | ABC | Houston and H |
| Cameron County, TX | 2015 | South Central | 60 | ABC | Cam |
| Dallas County, TX | 2015 | South Central | 60 | ABC | Dall |
| New Orleans, LA | 2011 | South Central | 46 | ABC | NO and Nola |
| New Orleans, LA | 2012 | South Central | 150 | N02 and D10w24 | |
| Musco, GA (1) | 2011 | Southeast | 48 | 18 and 9 | |
| Musco, GA (2) | 2012 | Southeast | 7 | Musco bot.2 and GA | |
| Rio, FL | 2014 | Southeast | 51 | FLO | |
| Vaca Key, FL | 2009 | Southeast | 42 | Vaca | |
| Conch Key, FL | 2006 | Southeast | 42 | Conch | |
| Palm Beach Co, FL | 2006 | Southeast | 42 | Palm |
N = number of individual mosquitoes; Analyses = indicates which populations were included in SNP analyses and in one of the DIYABC analyses described in Methods. All populations were included in microsatellite genotyping and subsequent analyses of genetic diversity and population structure; Population abbreviation = abbreviations used in supplementary material: S1, S4 and S5 Figs.