FIGURE 3.

Distribution of the pair-wise SNP loci genotyped by the multi-locus SNP. A total of 942 pairs of loci including 909 pair-wise loci (e.g., 1A-1B) produced by SNPs mapped to two positions and 33 pair-wise loci (e.g., 1A-1B, 1A-1D, and 1B-1D) produced by SNPs mapped to three positions. The yellow block indicates the pairs between genomes A and B, while the green and gray blocks indicate the pairs between genomes A and D and between B and D, respectively. The red font indicates the pair-wise loci among the homoeologous chromosomes.