Table 3.

Most highly radiation‐induced proteins identified by proteome shotgun analysis

19IR vs 19NIa	19IR vs 42IRb	NSAF			Proteinf	RDRMg
		Allc	NId	IRe
>5	>5	5.4	0.0	4.9	Deide_01090 (DinB family protein)
		20.5	0.1	15.9	Deide_01160 (DdrD)	+
		0.8	0.3	0.4	Deide_06140 (ABC transporter)
		5.4	0.0	5.4	Deide_09150 (DdrA)	+
		0.7	0.1	0.6	Deide_19830 (ABC transporter)
		9.4	0.0	7.5	Deide_1p01260/Deide_3p00210 (RecAP)h	+
		2.8	0.0	2.8	Deide_20580 (conserved protein)	+
	>2.5	24.9	0.5	20.2	Deide_02990 (DdrB)	+
		9.7	0.5	6.5	Deide_19450 (RecAC)h	(+)
	>1.5	7.4	0.5	4.9	Deide_02842 (restriction enzyme)	+
		16.9	0.7	11.4	Deide_2p01380 (PprA)	+
	Not >1.5 with p  <   .05	21.9	2.1	10.1	Deide_00120 (SSB)	+
		0.5	0.0	0.4	Deide_06830 (phage tail sheath protein)
		3.3	0.4	1.6	Deide_18020 (alanine dehydrogenase)
		1.1	0.0	0.7	Deide_19040 (GTP‐binding protein HflX)
		5.6	0.0	3.7	Deide_20140 (N‐acetyltransferase)
		1.2	0.0	0.8	Deide_23470 (branched‐chain alpha‐keto acid dehydrogenase subunit E2)
>2.5	>1.5	13.7	2.1	7.2	Deide_12520 (GyrA)	+
		22.6	2.6	13.2	Deide_15490 (GyrB)	+
	Not >1.5 with p  <   .05	3.0	0.2	1.9	Deide_01730 (divalent‐cation tolerance protein)
		1.3	0.2	0.7	Deide_12320 (conserved protein)
		5.6	0.6	2.3	Deide_22200 (GTPase Obg)
		2.7	0.5	1.2	Deide_3p01130 (ABC transporter)

^aTfold for comparison irradiated versus non‐irradiated of the wild‐type (RD19) (p < .05).

^bTfold for comparison irradiated wild‐type versus irradiated ΔirrE (RD42) (p < .05).

^cAccumulated for all samples.

^dFor all samples of non‐irradiated wild‐type and ΔirrE.

^eFor all samples of irradiated wild‐type and ΔddrO _C.

^fBold face indicates Tfold > 1.5 (p < .05) for comparison non‐irradiated ΔddrO _C versus non‐irradiated wild‐type.

^gRDRM identified in previous studies. +, upstream of the indicated gene; (+), upstream of the operon containing the indicated gene.

^hData for RecA_C and RecA_P calculated by taking into account only the peptides that distinguish between RecA_C and RecA_P.