TABLE 2.
Preexisting polymorphisms distinguishing DG1 from DSM639
| Position | Nucleotide(s) found in straina: |
ORF (Saci) | Effect | |
|---|---|---|---|---|
| DSM639 | DG1 | |||
| 6661 | A | C | _0010 | L→R |
| 81843 | TT | TC | _108 | Stop→R |
| 304011b | T | A | _0360 | Synonym |
| 304038b | T | C | _0360 | Synonym |
| 304052b | T | A | _0360 | M→K |
| 329548 | TT | CT | Intergenic | |
| 348066b | G | A | _0406 | T→M |
| 348082b | T | G | _0406 | N→H |
| 348226 | G | A | _0406 | Q→stop |
| 375745 | (A)8 | (A)9 | _0437 | Frameshift mid-ORF |
| 836667 | TT | TTT | _1037 | Frameshift mid-ORF |
| 1298723 | G | A | _1521 | A→T |
| 1674986 | (59bp)5 | (59bp)6 | CRISPR2 | SR copy no. |
| 1700422 | G | A | _1904 | Q→stop |
| 1837115b | TTTCCT | TCTCAG | _2023 | L→V plus synonym |
| 1837131b | CGGC | TGGT | _2023 | Synonym |
| 1837160b | TT | TC | _2023 | Synonym |
| 1837173b | TTTA | CCTT | _2023 | Synonym |
| 1917860 | G | A | _2099 | Synonym |
| 1937684 | G | A | _2116 | A→V |
| 2026424 | C | T | _2189 | A→T |
| 2027418 | (T)7 | (T)5 | Intergenic | |
a
59bp refers to TAGGAGGAAAATATAGGAATATAAAGATAGTACTAGTAATAACGACAAGAAACTAAAAC.
b
Clustered polymorphism; the second cluster is detailed in Fig. 5.