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. 2017 Aug 8;199(17):e00359-17. doi: 10.1128/JB.00359-17

TABLE 2.

Bacterial strains, plasmids, and oligonucleotides

Designation Description Source or purpose
Strains and mutations
    Rosetta 2 (DE3) pLysS E. coli used for protein expression Merck Millipore, Germany
    DH5α E. coli used for cloning TaKaRa, Japan
    T. thermophilus HB8 Wild type BioResource Center, RIKEN, Japan.
    ΔTTHA0328 TTHA0328 deletion strain of T. thermophilus This work
Plasmids
    pET11a-TTHA0328 Expression plasmid for nicotinamidase BioResource Center, RIKEN, Japan
    pUC19-HTK Source of thermostable kanamycin resistance cassette BioResource Center, RIKEN, Japan
    pUC19-ΔTTHA0328 Plasmid for TTHA0328 deletion, containing HTK gene This work
Oligonucleotides
    U-F 5′-ATTCGAGCTCGGTACCCGGGGGAGACCCGGTCCCCGTA-3′ PCR for upstream region of TTHA0328
    U-R 5′-GCCGTCAACGCACCTGGACCATGCCCTC-3′ PCR for upstream region of TTHA0328
    D-F 5′-GGTCCAGGTGCGTTGACGGCGGATATGG-3′ PCR for downstream region of TTHA0328
    D-R 5′-AAACAAACCGCGTAACCAACATGATTAAGAATTATTAGAGG-3′ PCR for downstream region of TTHA0328
    HTK-F 5′-GTTGGTTACGCGGTTTGTTTGAGCACCCCG-3′ PCR for HTK
    HTK-R 5′-CCTGCAGGTCGACTCTAGAGCCTCGCCGAAGGCGGGAA-3′ PCR for HTK
    Seq_F 5′-GCGTTGTTGAAGAAGAGCTGGG-3′ PCR for sequencing
    Seq_R 5′-CTTTAGGGGGAGGACAGGCTTC-3′ PCR for sequencing