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. 2017 Jun 21;6:586. Originally published 2017 Apr 27. [Version 2] doi: 10.12688/f1000research.11355.2

Figure 2. Arkas-Analysis Normalization Report: Normalization Analysis Using TMM and RUV.

Figure 2.

A) TMM normalization is performed on sample data and depicts the sample quantiles on normalized sample expression, PCA plot, and histogram of the adjusted p-values calculated from the DE analysis. Orange is the comparison group and green is the control group. B) A similar analysis is performed with RUV in-silico normalization.